BANCR Gene

HGNC Family Non-coding RNAs
Name BRAF-activated non-protein coding RNA
Description This gene produces a long non-coding RNA that plays a role in tumor progression and epithelial to mesenchymal transition. This transcript acts through the MAP kinase signaling pathway. [provided by RefSeq, Dec 2017]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n BRAF‐activated non‑coding RNA (BANCR) is a long non‑coding RNA whose expression and function appear to be highly context‐dependent. In melanoma, BANCR is overexpressed and has been shown to enhance tumor cell migration and proliferation by modulating microRNA networks (for example, the miR‑204/Notch2 axis) and downstream targets, suggesting an oncogenic role."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, studies in hepatocellular carcinoma and gastric cancer have demonstrated that elevated BANCR levels correlate with aggressive disease features and poor clinical outcome, with mechanistic investigations implicating activation of signaling pathways such as NF‑κB1 as well as interactions with microRNAs like miR‑9."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In type 1 endometrial cancer, BANCR upregulation has been associated with increased proliferation, migration, and invasion through the ERK/MAPK cascade and subsequent induction of matrix metalloproteinases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Conversely, in certain tumor types such as colorectal cancer and clear cell renal cell carcinoma, reduced BANCR expression has been observed; in these settings, restoration of BANCR expression suppresses cell growth via p21‐mediated G0/G1 cell cycle arrest and enhancement of apoptosis, suggesting a tumor‐suppressive function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In papillary thyroid carcinoma, BANCR expression is influenced by the presence of the BRAFV600E mutation, with its differential regulation predicting distinct patterns of lymphatic spread and capsule invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Moreover, in retinoblastoma, BANCR has been found to promote tumorigenesis by directly targeting miR‑204‑3p and modulating the Wnt/β‑catenin signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Finally, genetic variants in the BANCR gene have also been implicated in non‑neoplastic conditions such as coronary artery disease, underscoring its broader impact on cellular physiology and disease susceptibility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies suggest that BANCR may play dual roles in tumor biology—acting as an oncogene in some cancers while functioning as a tumor suppressor in others—through its ability to regulate key signaling pathways, affect cell cycle progression, and mediate interactions with multiple microRNAs. This context‑dependent functionality highlights the potential of BANCR as both a prognostic biomarker and a therapeutic target in diverse clinical settings.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ross J Flockhart, Dan E Webster, Kun Qu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gr.140061.112"}], "href": "https://doi.org/10.1101/gr.140061.112"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22581800"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22581800"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Bingjie Cai, Yunpeng Zheng, Shanshan Ma, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "BRAF activated non-coding RNA (BANCR) promoting gastric cancer cells proliferation via regulation of NF-κB1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2015.07.158"}], "href": "https://doi.org/10.1016/j.bbrc.2015.07.158"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26248136"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26248136"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tao Zhou, Yanjing Gao "}, {"type": "b", "children": [{"type": "t", "text": "Increased expression of LncRNA BANCR and its prognostic significance in human hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "World J Surg Oncol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12957-015-0757-5"}], "href": "https://doi.org/10.1186/s12957-015-0757-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26758762"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26758762"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Danni Wang, Danbo Wang, Ning Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA BANCR Promotes Endometrial Cancer Cell Proliferation and Invasion by Regulating MMP2 and MMP1 via ERK/MAPK Signaling Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000452577"}], "href": "https://doi.org/10.1159/000452577"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27898420"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27898420"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yongguo Shi, Yangchen Liu, Jirong Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulated Long Noncoding RNA BANCR Promotes the Proliferation of Colorectal Cancer Cells via Downregualtion of p21 Expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0122679"}], "href": "https://doi.org/10.1371/journal.pone.0122679"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25928067"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25928067"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Sheng Xue, Sheng-Qun Jiang, Qing-Wen Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Decreased expression of BRAF-activated long non-coding RNA is associated with the proliferation of clear cell renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Urol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12894-018-0395-7"}], "href": "https://doi.org/10.1186/s12894-018-0395-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30200918"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30200918"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Stefana Stojanović, Sonja Šelemetjev, Ilona Đorić, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elevated BANCR expression levels have different effects on papillary thyroid carcinoma progression depending on the presence of the BRAFV600E mutation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Surg Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejso.2020.05.027"}], "href": "https://doi.org/10.1016/j.ejso.2020.05.027"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32651027"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32651027"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Qing-Xiu Sun, Rong-Rong Wang, Na Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dysregulation of miR-204-3p Driven by the Viability and Motility of Retinoblastoma via Wnt/β-catenin Pathway In Vitro and In Vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Oncol Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12253-019-00722-0"}], "href": "https://doi.org/10.1007/s12253-019-00722-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31482398"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31482398"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Hongli Wang, Na Zhang, Guiru Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Proinflammatory cytokine IFN-γ, lncRNA BANCR and the occurrence of coronary artery disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.lfs.2019.05.066"}], "href": "https://doi.org/10.1016/j.lfs.2019.05.066"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31141710"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31141710"}]}]}]}
Synonyms LINC00586
NCBI Gene ID 100885775
API
Download Associations
Predicted Functions View BANCR's ARCHS4 Predicted Functions.
Co-expressed Genes View BANCR's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View BANCR's ARCHS4 Predicted Functions.

Functional Associations

BANCR has 58 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 3 datasets.

Click the + buttons to view associations for BANCR from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of BANCR gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of BANCR gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of BANCR gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.