BPESC1 Gene

HGNC Family Non-coding RNAs
Name blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n BPESC1 has emerged in several independent studies as a gene of interest with diverse potential roles in human disease. In a genome‐wide association study of systolic blood pressure, variants in an intergenic region encompassing BPESC1 were significantly associated with blood pressure regulation, suggesting a possible regulatory function in cardiovascular physiology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Moreover, BPESC1 was identified among differentially expressed long noncoding RNAs in a competing endogenous RNA network in stage I hepatocellular carcinoma, where its altered expression correlated with overall patient survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In a separate study focused on triple‐negative breast cancer, BPESC1 contributed to a compact RNA signature that robustly predicted pathological complete response after neoadjuvant chemotherapy, further highlighting its potential as a biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In investigations addressing disorders of sex development, molecular analyses of BPESC1 revealed normal coding sequences in affected individuals, indicating that while BPESC1 is evolutionarily conserved, it is unlikely to be directly causative in such sex‐determination anomalies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Comparative genomic studies in goats and mice confirmed the presence of BPESC1 orthologues, yet without clear functional attribution, and initial mapping in a patient with blepharophimosis syndrome (BPES) led to the identification of BPESC1—although further mutation screening demonstrated that it does not play a major pathogenic role in BPES."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yan Yan Wu, Laurent Briollais "}, {"type": "b", "children": [{"type": "t", "text": "Mixed-effects models for joint modeling of sequence data in longitudinal studies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Proc (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1753-6561-8-S1-S92"}], "href": "https://doi.org/10.1186/1753-6561-8-S1-S92"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25519347"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25519347"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xuefeng Gu, Hongbo Li, Ling Sha, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction and Comprehensive Analyses of a Competing Endogenous RNA Network in Tumor-Node-Metastasis Stage I Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/5831064"}], "href": "https://doi.org/10.1155/2020/5831064"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32104698"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32104698"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qian Wang, Chunmei Li, Peipei Tang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Minimal lncRNA-mRNA Signature Predicts Sensitivity to Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000492698"}], "href": "https://doi.org/10.1159/000492698"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30121642"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30121642"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Miroslav Dumic, Karen Lin-Su, Natasha I Leibel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Report of fertility in a woman with a predominantly 46,XY karyotype in a family with multiple disorders of sexual development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Endocrinol Metab (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/jc.2007-2155"}], "href": "https://doi.org/10.1210/jc.2007-2155"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18000096"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18000096"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Svetlana Nikic, Daniel Vaiman "}, {"type": "b", "children": [{"type": "t", "text": "Conserved patterns of gene expression in mice and goats in the vicinity of the Polled Intersex Syndrome (PIS) locus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Chromosome Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1023/B:CHRO.0000034746.46789.e0"}], "href": "https://doi.org/10.1023/B:CHRO.0000034746.46789.e0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15252242"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15252242"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "E De Baere, Y Fukushima, K Small, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of BPESC1, a novel gene disrupted by a balanced chromosomal translocation, t(3;4)(q23;p15.2), in a patient with BPES."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2000)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1006/geno.2000.6304"}], "href": "https://doi.org/10.1006/geno.2000.6304"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "10995571"}], "href": "https://pubmed.ncbi.nlm.nih.gov/10995571"}]}]}]}
Synonyms NCRNA00187
Proteins BPEC1_HUMAN
NCBI Gene ID 60467
API
Download Associations
Predicted Functions View BPESC1's ARCHS4 Predicted Functions.
Co-expressed Genes View BPESC1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View BPESC1's ARCHS4 Predicted Functions.

Functional Associations

BPESC1 has 967 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 27 datasets.

Click the + buttons to view associations for BPESC1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of BPESC1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of BPESC1 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of BPESC1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of BPESC1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of BPESC1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of BPESC1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of BPESC1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of BPESC1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at BPESC1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of BPESC1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of BPESC1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of BPESC1 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing BPESC1 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of BPESC1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of BPESC1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of BPESC1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of BPESC1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of BPESC1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles cell lines with high or low expression of BPESC1 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of BPESC1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of BPESC1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of BPESC1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of BPESC1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain BPESC1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of BPESC1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at BPESC1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of BPESC1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.