| HGNC Family | BPI fold containing (BPIF) |
| Name | BPI fold containing family A, member 4, pseudogene |
| Description | Predicted to enable lipid binding activity. Predicted to be involved in surfactant homeostasis. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nBPIFA4P, also known as BASE, was initially identified during a screen for novel transcripts enriched in breast and prostate cancer cells relative to essential normal tissues. In this study, a subtracted cDNA library from several breast cancer cell lines and a prostate cancer cell line revealed that BASE encodes a secreted protein that is expressed in many breast cancers while being absent from critical normal organs such as brain, liver, lung, kidney, and muscle. This cancer‐selective expression pattern suggests that BPIFA4P may serve as both a diagnostic marker and a potential therapeutic target in these cancers."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "In further investigations using estrogen-responsive breast cancer cell models, BPIFA4P expression was shown to be modulated by hormonal signals. Specifically, estrogen was found to repress BPIFA4P transcription through an estrogen receptor alpha (ERα)–dependent mechanism. Promoter analyses identified a 2‐kb upstream enhancer with functional binding sites for both ERα and the transcription factor FoxA1, which emphasizes the gene’s complex, hormone-regulated expression and supports its role as a marker of estrogen-responsive tumors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "Additional studies on members of the PLUNC gene family, to which BPIFA4P is related, have demonstrated that genetic variants—such as single nucleotide polymorphisms in the promoter region—can influence gene activity and may contribute to cancer susceptibility. For example, a promoter SNP was associated with altered promoter activity in the PLUNC gene and linked to an increased risk for nasopharyngeal carcinoma. These findings broaden the functional significance of BPIFA4P, proposing a role not only in tumor detection and progression but also in mediating individual susceptibility to certain cancers."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kristi A Egland, James J Vincent, Robert Strausberg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Discovery of the breast cancer gene BASE using a molecular approach to enrich for genes encoding membrane and secreted proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0337425100"}], "href": "https://doi.org/10.1073/pnas.0337425100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12538848"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12538848"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Nancy Bretschneider, Heike Brand, Nicola Miller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Estrogen induces repression of the breast cancer and salivary gland expression gene in an estrogen receptor alpha-dependent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-07-5647"}], "href": "https://doi.org/10.1158/0008-5472.CAN-07-5647"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18172302"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18172302"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Beina Liu, Rong Wang, Ying He "}, {"type": "b", "children": [{"type": "t", "text": "Functional Study of Polymorphism 1888 C>T in the Promoter Region of Human PLUNC Gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.amjms.2020.06.018"}], "href": "https://doi.org/10.1016/j.amjms.2020.06.018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33722345"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33722345"}]}]}]}
|
| Synonyms | BASE |
| Proteins | LATH_HUMAN |
| NCBI Gene ID | 317716 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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BPIFA4P has 495 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.
Click the + buttons to view associations for BPIFA4P from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of BPIFA4P gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of BPIFA4P gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of BPIFA4P gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of BPIFA4P gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of BPIFA4P gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of BPIFA4P gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at BPIFA4P gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of BPIFA4P gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of BPIFA4P gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with BPIFA4P gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of BPIFA4P gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of BPIFA4P gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of BPIFA4P gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of BPIFA4P gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of BPIFA4P gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of BPIFA4P gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with BPIFA4P gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of BPIFA4P gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of BPIFA4P gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of BPIFA4P gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at BPIFA4P gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of BPIFA4P gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |