BPY2B Gene

Name basic charge, Y-linked, 2B
Description This gene is located in the nonrecombining portion of the Y chromosome, and expressed specifically in testis. The encoded protein interacts with ubiquitin protein ligase E3A and may be involved in male germ cell development and male infertility. Three nearly identical copies of this gene exist on chromosome Y; two copies are part of a palindromic region. This record represents the more centromeric copy within the palindrome. [provided by RefSeq, Jul 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe BPY2B gene product, also referred to as VCY2 in these studies, is a testis‐specific protein that localizes predominantly to the nuclei of germ cells including spermatogonia, spermatocytes, round spermatids, and even ejaculated spermatozoa. Its expression pattern in normal testicular tissue along with its marked reduction or absence in cases of maturation arrest or hypospermatogenesis underscores its likely pivotal role in germ cell development and the regulation of spermatogenesis, with impaired expression being associated with male infertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Furthermore, BPY2B/VCY2 has been shown to interact directly with ubiquitin-protein ligase E3A (UBE3A). Using yeast two-hybrid screening complemented by co-immunoprecipitation studies, researchers demonstrated that UBE3A binds to a specific domain of the BPY2B/VCY2 protein, suggesting that ubiquitination may be necessary for its proper function during spermatogenesis—an observation further supported by the co-expression of both mRNAs in ejaculated spermatozoa."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "Collectively, these findings indicate that BPY2B/VCY2 plays a critical regulatory role in male germ cell development possibly through mechanisms involving nuclear localization and post-translational modification by ubiquitination, thereby contributing to normal spermatogenesis and male fertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "J Y M Tse, E Y M Wong, A N Y Cheung, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Specific expression of VCY2 in human male germ cells and its involvement in the pathogenesis of male infertility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.103.015792"}], "href": "https://doi.org/10.1095/biolreprod.103.015792"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12724276"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12724276"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Elaine Y M Wong, Jenny Y M Tse, Kwok-Ming Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "VCY2 protein interacts with the HECT domain of ubiquitin-protein ligase E3A."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0006-291x(02)02040-5"}], "href": "https://doi.org/10.1016/s0006-291x(02"}, {"type": "t", "text": "02040-5) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12207887"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12207887"}]}]}]}
Synonyms VCY2B
NCBI Gene ID 442867
API
Download Associations
Predicted Functions View BPY2B's ARCHS4 Predicted Functions.
Co-expressed Genes View BPY2B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View BPY2B's ARCHS4 Predicted Functions.

Functional Associations

BPY2B has 505 functional associations with biological entities spanning 7 categories (molecular profile, organism, chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for BPY2B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of BPY2B gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of BPY2B gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of BPY2B gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of BPY2B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of BPY2B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing BPY2B protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with BPY2B protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with BPY2B gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with BPY2B gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with BPY2B gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with BPY2B gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of BPY2B gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of BPY2B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of BPY2B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of BPY2B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Curated Protein Localization Annotations cellular components containing BPY2B protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain BPY2B protein from the LOCATE Predicted Protein Localization Annotations dataset.
MiRTarBase microRNA Targets microRNAs targeting BPY2B gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of BPY2B gene from the Rummagene Transcription Factor Associations 2026 dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of BPY2B gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with BPY2B protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.