| Name | basic charge, Y-linked, 2C |
| Description | This gene is located in the nonrecombining portion of the Y chromosome, and expressed specifically in testis. The encoded protein interacts with ubiquitin protein ligase E3A and may be involved in male germ cell development and male infertility. Three nearly identical copies of this gene exist on chromosome Y; two copies are part of a palindromic region. This record represents the more telomeric copy within the palindrome. [provided by RefSeq, Jul 2008] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent investigations into RNA uptake and immune regulation have revealed that specific transmembrane proteins facilitate the cellular import of extracellular RNAs. For instance, SIDT1 expressed in gastric pit cells is essential for the low-pH–dependent absorption of dietary microRNAs, impacting systemic gene regulation, while a related family member, SIDT2, is key for the cytosolic delivery of dsRNA from endolysosomal compartments to trigger innate antiviral responses. These findings illuminate critical mechanisms by which cells internalize and respond to exogenous RNA stimuli."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nParallel studies in reproductive biology have focused on Y-chromosome–encoded genes that influence male germ cell development. The testis-specific gene VCY2, localized to the nuclei of spermatogenic cells, is implicated in normal spermatogenesis, and its dysregulation has been associated with infertility. Moreover, interactions between VCY2 and the ubiquitin-protein ligase UBE3A suggest that targeted ubiquitination may be pivotal for its function in germ cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of hepatocellular carcinoma (HCC), a newly characterized long non‐coding RNA, AC006262.5, has been shown to enhance tumor proliferation, migration, and invasion by forming a regulatory loop with the tumor‐suppressive miR-7855-5p. Notably, this regulatory nexus results in the modulation of BPY2C expression, wherein upregulation of AC006262.5 suppresses miR-7855-5p, thereby facilitating elevated BPY2C levels. Although the precise functional role of BPY2C in HCC remains to be fully elucidated, its upregulation in response to this lncRNA–miRNA axis suggests that BPY2C may contribute to the oncogenic processes underlying HCC progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qun Chen, Fan Zhang, Lei Dong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SIDT1-dependent absorption in the stomach mediates host uptake of dietary and orally administered microRNAs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41422-020-0389-3"}], "href": "https://doi.org/10.1038/s41422-020-0389-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32801357"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32801357"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tan A Nguyen, Blake R C Smith, Kirstin D Elgass, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SIDT1 Localizes to Endolysosomes and Mediates Double-Stranded RNA Transport into the Cytoplasm."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1801369"}], "href": "https://doi.org/10.4049/jimmunol.1801369"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31061008"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31061008"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "J Y M Tse, E Y M Wong, A N Y Cheung, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Specific expression of VCY2 in human male germ cells and its involvement in the pathogenesis of male infertility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.103.015792"}], "href": "https://doi.org/10.1095/biolreprod.103.015792"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12724276"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12724276"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Elaine Y M Wong, Jenny Y M Tse, Kwok-Ming Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "VCY2 protein interacts with the HECT domain of ubiquitin-protein ligase E3A."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0006-291x(02)02040-5"}], "href": "https://doi.org/10.1016/s0006-291x(02"}, {"type": "t", "text": "02040-5) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12207887"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12207887"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Fen-Rong Chen, Yan Wang, Yan Cheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The AC006262.5-miR-7855-5p-BPY2C axis facilitates hepatocellular carcinoma proliferation and migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Cell Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1139/bcb-2019-0239"}], "href": "https://doi.org/10.1139/bcb-2019-0239"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32956593"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32956593"}]}]}]}
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| Synonyms | VCY2C |
| NCBI Gene ID | 442868 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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BPY2C has 427 functional associations with biological entities spanning 4 categories (functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.
Click the + buttons to view associations for BPY2C from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of BPY2C gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of BPY2C gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing BPY2C protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with BPY2C protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with BPY2C gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with BPY2C gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with BPY2C gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with BPY2C gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing BPY2C from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of BPY2C gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of BPY2C gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of BPY2C gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of BPY2C gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting BPY2C gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for BPY2C from the Pathway Commons Protein-Protein Interactions dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of BPY2C gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of BPY2C gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with BPY2C protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |