C16ORF90 Gene

Name chromosome 16 open reading frame 90
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n C16orf90 has recently emerged as a candidate gene potentially involved in neurodevelopment, as indicated by genomic investigations in patient cohorts with intellectual disability (ID). In a comprehensive exome sequencing study of individuals with ID (4), de novo and recessive variants in C16orf90 were identified alongside mutations in several other genes implicated in neuronal function and brain development. Although its precise biological role remains to be fully characterized, the mutational evidence in patients with overlapping neurodevelopmental phenotypes points toward a contributory role of C16orf90 in cognitive development and neuronal maintenance.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n This candidate nomination is part of a broader trend in biomedical research where high-throughput and population‐level screening methods are utilized to uncover novel gene–phenotype relationships. For example, dynamic modelling of cell cycle disruptions was successfully applied to uncover gene functions in processes such as mitosis and cell death (1), while epigenome‐wide profiling in prostate cancer has revealed differential methylation patterns that may inform disease progression (2). Additionally, whole-genome sequencing approaches continue to expand our understanding of genes involved in complex traits such as sleep-disordered breathing, highlighting associations in pathways linked to lung development and hypoxic responses (3). Together, these studies underscore the power of multifaceted genomic approaches in identifying novel candidate genes like C16orf90, which warrant further functional investigation."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Gregoire Pau, Thomas Walter, Beate Neumann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Bioinformatics (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2105-14-308"}], "href": "https://doi.org/10.1186/1471-2105-14-308"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24131777"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24131777"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rohina Rubicz, Shanshan Zhao, Milan Geybels, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA methylation profiles in African American prostate cancer patients in relation to disease progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2016.02.004"}], "href": "https://doi.org/10.1016/j.ygeno.2016.02.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26902887"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26902887"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Brian E Cade, Jiwon Lee, Tamar Sofer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13073-021-00917-8"}], "href": "https://doi.org/10.1186/s13073-021-00917-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34446064"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34446064"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "S Anazi, S Maddirevula, E Faqeih, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Clinical genomics expands the morbid genome of intellectual disability and offers a high diagnostic yield."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Psychiatry (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/mp.2016.113"}], "href": "https://doi.org/10.1038/mp.2016.113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27431290"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27431290"}]}]}]}
Synonyms C16orf90
Proteins CP090_HUMAN
NCBI Gene ID 646174
API
Download Associations
Predicted Functions View C16ORF90's ARCHS4 Predicted Functions.
Co-expressed Genes View C16ORF90's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View C16ORF90's ARCHS4 Predicted Functions.

Functional Associations

C16ORF90 has 1,430 functional associations with biological entities spanning 8 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, chemical, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 37 datasets.

Click the + buttons to view associations for C16ORF90 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of C16ORF90 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles tissues with high or low expression of C16ORF90 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of C16ORF90 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of C16ORF90 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
BioGPS Mouse Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of C16ORF90 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of C16ORF90 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of C16ORF90 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of C16ORF90 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of C16ORF90 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by C16ORF90 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with C16ORF90 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at C16ORF90 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of C16ORF90 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of C16ORF90 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells PubMedIDs of publications reporting gene signatures containing C16ORF90 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of C16ORF90 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of C16ORF90 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of C16ORF90 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of C16ORF90 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of C16ORF90 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of C16ORF90 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
InterPro Predicted Protein Domain Annotations protein domains predicted for C16ORF90 protein from the InterPro Predicted Protein Domain Annotations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of C16ORF90 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of C16ORF90 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of C16ORF90 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain C16ORF90 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of C16ORF90 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of C16ORF90 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations gene perturbations changing expression of C16ORF90 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of C16ORF90 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at C16ORF90 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of C16ORF90 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of C16ORF90 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of C16ORF90 gene from the RummaGEO Gene Perturbation Signatures dataset.
TargetScan Predicted Conserved microRNA Targets microRNAs regulating expression of C16ORF90 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of C16ORF90 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of C16ORF90 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.