C1RL-AS1 Gene

Name C1RL antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent integrative studies in cancer‐related long noncoding RNAs have begun to shed light on the functional roles of emerging transcripts such as C1RL‐AS1. While many lncRNAs remain poorly characterized, converging evidence indicates that C1RL‐AS1 may serve as a regulatory hub in tumorigenesis by acting as a competing endogenous RNA (ceRNA) that interacts with multiple cancer‐associated microRNAs and thereby modulates the expression of nearby protein‐coding genes. In one study, a state‐of‐the‐art machine learning classifier (CRlncRC2) was developed to identify cancer‐related lncRNA candidates based on multi‐omics features—including somatic mutation profiles, genomic proximity to known cancer genes, and differential expression in tumor tissues—which supports the candidacy of transcripts like C1RL‐AS1 in influencing oncogenic pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similar investigations have further implicated lncRNAs in fine‐tuning cellular networks that control cell proliferation, apoptosis, and immune responses within the tumor microenvironment."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Together, these studies suggest that C1RL‐AS1, like other cancer‐related lncRNAs, might contribute to tumor progression and may hold promise both as a biomarker and as a potential therapeutic target. Ongoing and future functional assays will be critical to clarify the precise molecular mechanisms by which C1RL‐AS1 exerts its influence in cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xuan Zhang, Tianjun Li, Jun Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Cancer-Related Long Non-Coding RNAs Using XGBoost With High Accuracy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2019.00735"}], "href": "https://doi.org/10.3389/fgene.2019.00735"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31456817"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31456817"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Wenru Jiang, Yingtao Song, Zhaowei Zhong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ferroptosis-Related Long Non-Coding RNA Signature Contributes to the Prediction of Prognosis Outcomes in Head and Neck Squamous Cell Carcinomas."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2021.785839"}], "href": "https://doi.org/10.3389/fgene.2021.785839"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34976018"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34976018"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Wu Zhen-Hua, Gong Yi-Wei, Zhao Li-Qin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Silencing of LncRNA C1RL-AS1 Suppresses the Malignant Phenotype in Gastric Cancer Cells via the AKT/β-Catenin/c-Myc Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2020.01508"}], "href": "https://doi.org/10.3389/fonc.2020.01508"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32983994"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32983994"}]}]}]}
Synonyms MATL2963
NCBI Gene ID 283314
API
Download Associations
Predicted Functions View C1RL-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View C1RL-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View C1RL-AS1's ARCHS4 Predicted Functions.

Functional Associations

C1RL-AS1 has 2,065 functional associations with biological entities spanning 6 categories (molecular profile, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.

Click the + buttons to view associations for C1RL-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of C1RL-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of C1RL-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of C1RL-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of C1RL-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of C1RL-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of C1RL-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of C1RL-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at C1RL-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of C1RL-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of C1RL-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of C1RL-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of C1RL-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of C1RL-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of C1RL-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of C1RL-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of C1RL-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of C1RL-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of C1RL-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of C1RL-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain C1RL-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of C1RL-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of C1RL-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at C1RL-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.