C5ORF17 Gene

Name chromosome 5 open reading frame 17
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have implicated the long noncoding RNA C5orf17 as a potential biomarker across diverse pathological conditions. In patients with rheumatoid arthritis, for example, C5orf17 expression was significantly dysregulated in peripheral blood mononuclear cells alongside other lncRNAs related to apoptosis and autophagy, with its altered levels correlating with clinical indexes and patient self‐perception."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In another context, analysis of transcriptomes in peripheral leukocytes from patients undergoing oxaliplatin‐based chemotherapy revealed that C5orf17 was notably upregulated in individuals experiencing chemotherapy‐induced peripheral neuropathy, suggesting a role for this lncRNA in the onset of adverse treatment effects."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Furthermore, studies in lung squamous cell carcinoma identified C5orf17 as one of several prognostically relevant lncRNAs, with its inclusion in a competitive endogenous RNA network contributing to a prognostic model that may aid in individualized patient management."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Collectively, these findings underscore the emerging relevance of C5orf17 in disease diagnosis, monitoring, and prognostication.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jianting Wen, Jian Liu, Hui Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA expression profiles related to apoptosis and autophagy in peripheral blood mononuclear cells of patients with rheumatoid arthritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Open Bio (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/2211-5463.12913"}], "href": "https://doi.org/10.1002/2211-5463.12913"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32569434"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32569434"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Manuel Morales, Julio Ávila, Rebeca González-Fernández, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential transcriptome profile of peripheral white cells to identify biomarkers involved in oxaliplatin induced neuropathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Pers Med (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/jpm4020282"}], "href": "https://doi.org/10.3390/jpm4020282"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25563226"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25563226"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Lingyu Qi, Tingting Zhang, Yan Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of lncRNAs associated with lung squamous cell carcinoma prognosis in the competitive endogenous RNA network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PeerJ (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7717/peerj.7727"}], "href": "https://doi.org/10.7717/peerj.7727"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31576252"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31576252"}]}]}]}
Synonyms C5orf17
Proteins CE017_HUMAN
NCBI Gene ID 439936
API
Download Associations
Predicted Functions View C5ORF17's ARCHS4 Predicted Functions.
Co-expressed Genes View C5ORF17's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View C5ORF17's ARCHS4 Predicted Functions.

Functional Associations

C5ORF17 has 401 functional associations with biological entities spanning 6 categories (organism, chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for C5ORF17 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of C5ORF17 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of C5ORF17 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of C5ORF17 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of C5ORF17 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of C5ORF17 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of C5ORF17 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with C5ORF17 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of C5ORF17 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of C5ORF17 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of C5ORF17 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain C5ORF17 protein from the LOCATE Predicted Protein Localization Annotations dataset.