| Name | chromosome 8 open reading frame 90 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nCollagen and calcium-binding EGF domains 1 (CCBE1) is a secreted protein that plays an essential role in embryonic and postnatal lymphangiogenesis by enhancing vascular endothelial growth factor‐C (VEGF‐C) signaling. CCBE1 accomplishes this through distinct domain functions: its C-terminal domain facilitates the proteolytic activation of pro-VEGF-C by ADAMTS3, while its N-terminal domain promotes the colocalization of pro-VEGF-C with its activating protease at the lymphatic endothelial cell surface. This dual mechanism strengthens VEGFR-3 signaling, which is crucial for the proper formation and maintenance of lymphatic vessels."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its lymphangiogenic functions, CCBE1 is critically involved in cardiac development. It is expressed early in the cardiac progenitor fields—including the first and second heart fields and the proepicardium—and contributes to the commitment of cardiac mesoderm during embryonic stem cell differentiation. CCBE1’s modulatory effects on VEGF-C signaling are also implicated in the formation of the coronary vasculature, underscoring its significance in orchestrating proper heart organogenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in the vascular and cardiac systems, CCBE1 also exerts non–cell-autonomous effects on definitive erythropoiesis in the fetal liver by modulating the hematopoietic microenvironment, including the formation of erythroblastic islands and the function of macrophages. Moreover, studies in zebrafish have offered additional insights into CCBE1’s regulatory influence on the lymphatic network, while investigations in mammals point to its importance in the development and in the age-dependent maintenance of meningeal lymphatics critical for macromolecule drainage."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Frank L Bos, Maresa Caunt, Josi Peterson-Maduro, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "CCBE1 enhances lymphangiogenesis via A disintegrin and metalloprotease with thrombospondin motifs-3-mediated vascular endothelial growth factor-C activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.113.002779"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.113.002779"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24552833"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24552833"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "M Guy Roukens, Josi Peterson-Maduro, Yvonne Padberg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional Dissection of the CCBE1 Protein: A Crucial Requirement for the Collagen Repeat Domain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCRESAHA.116.304949"}], "href": "https://doi.org/10.1161/CIRCRESAHA.116.304949"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25814692"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25814692"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sawan Kumar Jha, Khushbu Rauniyar, Terhi Karpanen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Efficient activation of the lymphangiogenic growth factor VEGF-C requires the C-terminal domain of VEGF-C and the N-terminal domain of CCBE1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-017-04982-1"}], "href": "https://doi.org/10.1038/s41598-017-04982-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28687807"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28687807"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "João Facucho-Oliveira, Margaret Bento, José-António Belo "}, {"type": "b", "children": [{"type": "t", "text": "Ccbe1 expression marks the cardiac and lymphatic progenitor lineages during early stages of mouse development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Dev Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1387/ijdb.113394jf"}], "href": "https://doi.org/10.1387/ijdb.113394jf"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22252499"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22252499"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Fernando Bonet, Paulo N G Pereira, Oriol Bover, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CCBE1 is required for coronary vessel development and proper coronary artery stem formation in the mouse heart."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Dyn (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/dvdy.24670"}], "href": "https://doi.org/10.1002/dvdy.24670"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30204931"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30204931"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Oriol Bover, Tiago Justo, Paulo N G Pereira, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Ccbe1 affects cardiac-specification and cardiomyocyte differentiation in mouse embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0205108"}], "href": "https://doi.org/10.1371/journal.pone.0205108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30281646"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30281646"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Zhiying Zou, David R Enis, Hung Bui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The secreted lymphangiogenic factor CCBE1 is essential for fetal liver erythropoiesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2012-10-462689"}], "href": "https://doi.org/10.1182/blood-2012-10-462689"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23426945"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23426945"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Andreas van Impel, Stefan Schulte-Merker "}, {"type": "b", "children": [{"type": "t", "text": "A fisheye view on lymphangiogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Adv Anat Embryol Cell Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/978-3-7091-1646-3_12"}], "href": "https://doi.org/10.1007/978-3-7091-1646-3_12"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24276893"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24276893"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Zsombor Ocskay, László Bálint, Carolin Christ, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CCBE1 regulates the development and prevents the age-dependent regression of meningeal lymphatics."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2023.116032"}], "href": "https://doi.org/10.1016/j.biopha.2023.116032"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38141283"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38141283"}]}]}]}
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| NCBI Gene ID | 122455339 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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C8ORF90 has 387 functional associations with biological entities spanning 2 categories (chemical, gene, protein or microRNA) extracted from 3 datasets.
Click the + buttons to view associations for C8ORF90 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of C8ORF90 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of C8ORF90 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of C8ORF90 gene from the RummaGEO Gene Perturbation Signatures dataset. | |