| Name | CACNA1C antisense RNA 2 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the query requested a summary of CACNA1C‐AS2, none of the provided abstracts directly mention or address this transcript. Instead, the abstracts collectively focus on the XPG gene and its protein product, which plays a critical role in maintaining genomic integrity through nucleotide excision repair (NER) and related processes. In these studies, mutations—particularly those truncating the C-terminal region of XPG—result in a loss or reduction of NER function, which has been linked to disorders such as xeroderma pigmentosum (XP) and Cockayne syndrome (CS). The data underscore that complete loss of repair activity, as seen with large deletions, is associated with severe phenotypes (e.g., growth retardation and a shortened lifespan), whereas mutations that partly retain NER activity can lead to milder outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther investigations detailed in the abstracts demonstrate that the extent of the C-terminal deletion in XPG is crucial; removal of the last 360 amino acids completely abrogates NER and produces a CS phenotype, while a smaller deletion affecting the last 183 amino acids preserves residual NER activity. These findings highlight a dual function for XPG—not only serving as an endonuclease in NER but also participating in additional cellular processes that help modulate disease severity under certain genetic contexts. Such secondary functions are suggested to be evolutionarily conserved in vertebrates."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, complementary studies reveal that proper interactions between XPG and other factors, such as those within the TFIIH transcription/repair complex, are essential for preventing aberrant DNA structures (e.g., long single-strand gaps) following UV irradiation. Disruption of these interactions may underlie genomic instability and contribute to phenomena such as drug resistance in cancer therapy. Collectively, while these abstracts elucidate the multifaceted roles of XPG in genome maintenance and repair, they do not provide functional insights into CACNA1C‐AS2."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ming Tian, David A Jones, Michele Smith, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deficiency in the nuclease activity of xeroderma pigmentosum G in mice leads to hypersensitivity to UV irradiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.24.6.2237-2242.2004"}], "href": "https://doi.org/10.1128/MCB.24.6.2237-2242.2004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14993263"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14993263"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Naoko Shiomi, Seiji Kito, Masaki Oyama, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of the XPG region that causes the onset of Cockayne syndrome by using Xpg mutant mice generated by the cDNA-mediated knock-in method."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.24.9.3712-3719.2004"}], "href": "https://doi.org/10.1128/MCB.24.9.3712-3719.2004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15082767"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15082767"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Naoko Shiomi, Masahiko Mori, Seiji Kito, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Severe growth retardation and short life span of double-mutant mice lacking Xpa and exon 15 of Xpg."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2004.10.009"}], "href": "https://doi.org/10.1016/j.dnarep.2004.10.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15661658"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15661658"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Maria Antonietta Sabatino, Mirko Marabese, Monica Ganzinelli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Down-regulation of the nucleotide excision repair gene XPG as a new mechanism of drug resistance in human and murine cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1476-4598-9-259"}], "href": "https://doi.org/10.1186/1476-4598-9-259"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20868484"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20868484"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Camille Godon, Sophie Mourgues, Julie Nonnekens, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Generation of DNA single-strand displacement by compromised nucleotide excision repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/emboj.2012.193"}], "href": "https://doi.org/10.1038/emboj.2012.193"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22863773"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22863773"}]}]}]}
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| NCBI Gene ID | 100874235 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CACNA1C-AS2 has 440 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 2 datasets.
Click the + buttons to view associations for CACNA1C-AS2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of CACNA1C-AS2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CACNA1C-AS2 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |