CALHM6 Gene

Name calcium homeostasis modulator family member 6
Description Predicted to enable monoatomic cation channel activity. Predicted to be involved in ATP export; monoatomic cation transmembrane transport; and regulation of natural killer cell cytokine production. Predicted to be located in immunological synapse. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CALHM6 (also referred to as FAM26F) is a transmembrane protein that appears to play a dual role in ion transport and immune cell signaling. Structurally, CALHM6 contains a conserved Ca<sub>h</sub>om_mod domain and is predicted to function as a cation channel. Recent cryo‐electron microscopy studies have revealed that, unlike its paralog CALHM4 which forms cylindrical pores, CALHM6 adopts a distinct “conical” pore conformation that narrows at the intracellular side; this unique geometry is likely to alter the lipid distribution within the channel and could have important functional consequences for ion permeation and cellular signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its biophysical properties, CALHM6 is emerging as an important immunomodulator. Its expression is upregulated in response to immune stimulants—including polyinosinic‐polycytidylic acid, lipopolysaccharide, interferon‐γ, and tumor necrosis factor‐α—which suggests that CALHM6 may facilitate intercellular communication during inflammatory responses. In fact, studies in the context of kidney diseases such as steroid‐sensitive nephrotic syndrome have identified CALHM6/FAM26F among immune‐related genes that associate with disease susceptibility and progression, highlighting its potential role as a biomarker for immunologically driven pathology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, independent analyses of FAM26F expression in various immune contexts have demonstrated that this molecule is implicated in the activation and functional cross‐talk of natural killer cells and dendritic cells, reinforcing the concept that CALHM6 participates in orchestrating innate immune responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Taken together, CALHM6 is a uniquely structured calcium‐ and voltage‐gated cation channel with significant roles in regulating immune cell interactions and inflammatory responses. Its ability to switch conformations may serve as a molecular mechanism to modulate intercellular signaling events, making it an attractive target for further research into therapeutic interventions addressing immune‐mediated diseases.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Katarzyna Drożdżyk, Marta Sawicka, Maria-Isabel Bahamonde-Santos, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cryo-EM structures and functional properties of CALHM channels of the human placenta."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.55853"}], "href": "https://doi.org/10.7554/eLife.55853"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32374262"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32374262"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tomoko Horinouchi, Kandai Nozu, Kazumoto Iijima "}, {"type": "b", "children": [{"type": "t", "text": "An updated view of the pathogenesis of steroid-sensitive nephrotic syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pediatr Nephrol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00467-021-05401-4"}], "href": "https://doi.org/10.1007/s00467-021-05401-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35006356"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35006356"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Uzma Malik, Aneela Javed, Amjad Ali, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural and functional annotation of human FAM26F: A multifaceted protein having a critical role in the immune system."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2016.10.029"}], "href": "https://doi.org/10.1016/j.gene.2016.10.029"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27784631"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27784631"}]}]}]}
NCBI Gene ID 441168
API
Download Associations
Predicted Functions View CALHM6's ARCHS4 Predicted Functions.
Co-expressed Genes View CALHM6's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CALHM6's ARCHS4 Predicted Functions.

Functional Associations

CALHM6 has 968 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 22 datasets.

Click the + buttons to view associations for CALHM6 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CALHM6 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with CALHM6 gene from the CellMarker Gene-Cell Type Associations dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CALHM6 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with CALHM6 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with CALHM6 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with CALHM6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by CALHM6 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of CALHM6 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of CALHM6 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of CALHM6 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with CALHM6 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by CALHM6 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CALHM6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of CALHM6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of CALHM6 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
PFOCR Pathway Figure Associations 2024 pathways involving CALHM6 protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CALHM6 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CALHM6 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CALHM6 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CALHM6 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CALHM6 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with CALHM6 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.