CASC15 Gene

Name cancer susceptibility candidate 15 (non-protein coding)
Description This gene produces a long non-coding RNA that may regulate cell proliferation. This RNA is upregulated in hepatocellular carcinoma, where it is thought to function as an oncogene. However, some splice variants of this gene may function as a tumor suppressor in neuroblastoma and other tumor types. Circular RNA variants were observed at this gene. [provided by RefSeq, Dec 2017]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA CASC15 has emerged as a multifunctional oncogenic regulator in a spectrum of human diseases. In hematologic malignancies, CASC15 has been shown to modulate the expression of nearby genes such as SOX4, thereby affecting cellular survival, proliferation, and differentiation in RUNX1‐translocated leukemia."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In solid tumors including metastatic melanoma, gastric cancer, colon cancer, cervical cancer, ovarian cancer, intrahepatic cholangiocarcinoma, and neuroblastoma, CASC15 is frequently upregulated and associated with aggressive disease features and poor prognosis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "9"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Mechanistically, CASC15 exerts its oncogenic functions through multiple complementary routes. It acts as a competing endogenous RNA by “sponging” microRNAs—for instance, miR‑4310 in colon cancer, miR‑33a‑5p in hepatocellular carcinoma, and miR‑365 in laryngeal and other cancers—thereby relieving the inhibition on downstream oncogenes (e.g., LGR5, TWIST1, cyclin D1) and activating critical signaling pathways such as Wnt/β‑catenin and PI3K/AKT."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}, {"type": "fg_f", "ref": "4"}, {"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Furthermore, CASC15 interacts with chromatin‐modifying factors (for example, EZH2 and WDR5) to control transcription of cell cycle inhibitors such as CDKN1A, and modulates the stability of key oncoproteins like MYCN via regulation of deubiquitinases such as USP36."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its roles in cancer, aberrant CASC15 expression has been implicated in other disease contexts. For example, in diabetic patients with chronic renal failure, high-glucose conditions induce CASC15 upregulation in podocytes, where it promotes apoptosis by sponging miR‑34c."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore that CASC15 functions as a versatile oncogenic long noncoding RNA. By modulating microRNA activity, epigenetic regulators, and key signaling cascades, CASC15 contributes to tumor initiation, progression, metastatic potential, and treatment resistance across multiple tumor types. Its consistent association with poor clinical outcomes marks CASC15 as a promising diagnostic biomarker and potential therapeutic target in cancer and other pathological conditions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Thilini R Fernando, Jorge R Contreras, Matteo Zampini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The lncRNA CASC15 regulates SOX4 expression in RUNX1-rearranged acute leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-017-0692-x"}], "href": "https://doi.org/10.1186/s12943-017-0692-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28724437"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28724437"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Laurent Lessard, Michelle Liu, Diego M Marzese, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The CASC15 Long Intergenic Noncoding RNA Locus Is Involved in Melanoma Progression and Phenotype Switching."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/jid.2015.200"}], "href": "https://doi.org/10.1038/jid.2015.200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26016895"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26016895"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qiong Wu, Shihao Xiang, Jiali Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA CASC15 regulates gastric cancer cell proliferation, migration and epithelial mesenchymal transition by targeting CDKN1A and ZEB1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Oncol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/1878-0261.12187"}], "href": "https://doi.org/10.1002/1878-0261.12187"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29489064"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29489064"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yang Li, Gongbin Chen, Yanju Yan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CASC15 promotes epithelial to mesenchymal transition and facilitates malignancy of hepatocellular carcinoma cells by increasing TWIST1 gene expression via miR-33a-5p sponging."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Pharmacol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejphar.2019.172589"}], "href": "https://doi.org/10.1016/j.ejphar.2019.172589"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31401158"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31401158"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhibin Zuo, Long Ma, Zuode Gong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA CASC15 promotes tongue squamous carcinoma progression through targeting miR-33a-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Environ Sci Pollut Res Int (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11356-018-2300-z"}], "href": "https://doi.org/10.1007/s11356-018-2300-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29804249"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29804249"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "S Shan, H-F Li, X-Y Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Higher lncRNA CASC15 expression predicts poor prognosis and associates with tumor growth in cervical cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201901_16862"}], "href": "https://doi.org/10.26355/eurrev_201901_16862"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30720157"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30720157"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Prasanna Kumar Juvvuna, Tanmoy Mondal, Mirco Di Marco, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NBAT1/CASC15-003/USP36 control MYCN expression and its downstream pathway genes in neuroblastoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurooncol Adv (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/noajnl/vdab056"}], "href": "https://doi.org/10.1093/noajnl/vdab056"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34056606"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34056606"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Hui Lin, Xian Xu, Kelie Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA CASC15, MiR-23b Cluster and SMAD3 form a Novel Positive Feedback Loop to promote Epithelial-Mesenchymal Transition and Metastasis in Ovarian Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/ijbs.67486"}], "href": "https://doi.org/10.7150/ijbs.67486"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35342355"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35342355"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Yuan Zhang, Lufei Zhang, Sinan Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-coding RNA CASC15 Promotes Intrahepatic Cholangiocarcinoma Possibly through Inducing PRDX2/PI3K/AKT Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res Treat (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4143/crt.2020.192"}], "href": "https://doi.org/10.4143/crt.2020.192"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33017884"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33017884"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Xiaohua Qin, Shuying Zhu, Yanxia Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA (LncRNA) CASC15 Is Upregulated in Diabetes-Induced Chronic Renal Failure and Regulates Podocyte Apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/MSM.919415"}], "href": "https://doi.org/10.12659/MSM.919415"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32053576"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32053576"}]}]}]}
Synonyms lnc-SOX4-1, LINC00340, CANT
NCBI Gene ID 401237
API
Download Associations
Predicted Functions View CASC15's ARCHS4 Predicted Functions.
Co-expressed Genes View CASC15's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CASC15's ARCHS4 Predicted Functions.

Functional Associations

CASC15 has 1,514 functional associations with biological entities spanning 6 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.

Click the + buttons to view associations for CASC15 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CASC15 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CASC15 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CASC15 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of CASC15 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
dbGAP Gene-Trait Associations traits associated with CASC15 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CASC15 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CASC15 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CASC15 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with CASC15 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of CASC15 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of CASC15 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CASC15 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of CASC15 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CASC15 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CASC15 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with CASC15 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with CASC15 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with CASC15 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with CASC15 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CASC15 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain CASC15 protein from the LOCATE Predicted Protein Localization Annotations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CASC15 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.