CASC16 Gene

Name cancer susceptibility candidate 16 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CASC16 is a gene located at 16q12 that has emerged as a notable cancer susceptibility candidate, particularly in breast cancer. Although early genome‐wide association studies highlighted single nucleotide polymorphisms (SNPs) in the region—including variants near the well‐studied TOX3 gene—CAS16 has been subsequently implicated as an independent contributor to breast cancer risk."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In-depth case–control studies have demonstrated that specific CASC16 polymorphisms, such as rs4784227 and rs12922061, are significantly associated with an increased risk of breast cancer and with features of clinical aggressiveness, including lymph node metastasis and associations in stratified analyses by age and stage"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ";."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " A meta-analysis further confirmed the correlation of the rs4784227 variant within CASC16 with increased breast cancer susceptibility across several genetic models, underscoring its potential utility as a risk marker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, studies integrating microRNA-related SNP analyses have replicated the association of CASC16 rs4784227 with breast cancer risk in diverse populations."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Beyond breast cancer, investigations into neuroblastoma have revealed that CASC16 is among the long non-coding RNAs whose promoter regions are bound by EZH2, suggesting that CASC16 may also participate in transcriptional regulatory networks that influence tumorigenesis in other malignancies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yoo-Jeong Han, Jing Zhang, Yonglan Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic and Epigenetic Regulation of TOX3 Expression in Breast Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0165559"}], "href": "https://doi.org/10.1371/journal.pone.0165559"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27806084"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27806084"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiaoxiao Zuo, Huanhuan Wang, Yin Mi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The association of CASC16 variants with breast Cancer risk in a northwest Chinese female population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s10020-020-0137-7"}], "href": "https://doi.org/10.1186/s10020-020-0137-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31996122"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31996122"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yao Sun, Peng Chen, Jiamin Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of polymorphisms in LOC105377871 and CASC16 with breast cancer in the northwest Chinese Han population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gene Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jgm.3131"}], "href": "https://doi.org/10.1002/jgm.3131"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31655495"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31655495"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiong-Shun Liang, Jun-Luan Mo, Li-Ming Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association between CASC16 rs4784227 polymorphism and breast cancer susceptibility: A meta-analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Medicine (Baltimore) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/MD.0000000000026215"}], "href": "https://doi.org/10.1097/MD.0000000000026215"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34260521"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34260521"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "K M Taufiqul Arif, Gabrielle Bradshaw, Thanh T N Nguyen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic Association Analysis Implicates Six MicroRNA-Related SNPs With Increased Risk of Breast Cancer in Australian Caucasian Women."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Breast Cancer (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.clbc.2021.03.012"}], "href": "https://doi.org/10.1016/j.clbc.2021.03.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33952417"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33952417"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mujie Ye, Lulu Xie, Jingjing Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Determination of long non-coding RNAs associated with EZH2 in neuroblastoma by RIP-seq, RNA-seq and ChIP-seq."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2020.11862"}], "href": "https://doi.org/10.3892/ol.2020.11862"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32774475"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32774475"}]}]}]}
Synonyms LINC00918
NCBI Gene ID 643714
API
Download Associations
Predicted Functions View CASC16's ARCHS4 Predicted Functions.
Co-expressed Genes View CASC16's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CASC16's ARCHS4 Predicted Functions.

Functional Associations

CASC16 has 187 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for CASC16 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CASC16 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with CASC16 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of CASC16 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CASC16 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CASC16 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with CASC16 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with CASC16 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CASC16 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain CASC16 protein from the LOCATE Predicted Protein Localization Annotations dataset.