CAVIN1 Gene

Name caveolae associated protein 1
Description This gene encodes a protein that enables the dissociation of paused ternary polymerase I transcription complexes from the 3' end of pre-rRNA transcripts. This protein regulates rRNA transcription by promoting the dissociation of transcription complexes and the reinitiation of polymerase I on nascent rRNA transcripts. This protein also localizes to caveolae at the plasma membrane and is thought to play a critical role in the formation of caveolae and the stabilization of caveolins. This protein translocates from caveolae to the cytoplasm after insulin stimulation. Caveolae contain truncated forms of this protein and may be the site of phosphorylation-dependent proteolysis. This protein is also thought to modify lipid metabolism and insulin-regulated gene expression. Mutations in this gene result in a disorder characterized by generalized lipodystrophy and muscular dystrophy. [provided by RefSeq, Nov 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n PTRF (polymerase I and transcript release factor), also known as Cavin‐1, is a cytoplasmic protein that is absolutely essential for the biogenesis and function of caveolae – specialized invaginations of the plasma membrane. PTRF/Cavin‐1 performs a multifaceted role by assembling with caveolins and other cavin family members into a multiprotein coat that not only promotes caveola formation but also stabilizes caveolar structures and regulates the lateral mobility and trafficking of caveolin proteins at the cell surface."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Deficiency or mutation of PTRF/Cavin‐1 disrupts caveola assembly, resulting in reduced numbers or even complete loss of caveolae. Such defects underlie diverse pathologies including congenital generalized lipodystrophy, muscular dystrophy, and cardiac or metabolic dysfunction, as documented by studies that show aberrant caveolin localization, membrane repair defects, and altered signaling cascades when PTRF is absent or mutated."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, PTRF/Cavin‐1 has been implicated in dynamic cellular processes beyond caveola formation. For instance, its regulated subcellular targeting – shifting between the nucleus, cytosol, and plasma membrane – appears to influence cellular senescence and mechanotransduction, thereby linking changes in membrane structure to the modulation of intracellular signaling via pathways such as p53/p21."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, PTRF/Cavin‐1 plays a critical role in membrane repair by serving as a docking site for repair proteins like MG53, a function that is vital to maintaining cell integrity following injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n PTRF/Cavin‐1 is also significant in the context of tumor biology. Its expression modulates exosome secretion and affects the tumor microenvironment, thereby influencing the aggressiveness and metastatic potential of several cancers including glioma and prostate cancer. In prostate cancer models, reintroduction of PTRF/Cavin‐1 not only restores caveola formation but also attenuates anchorage‐independent growth and metastatic behavior, suggesting a tumor‐suppressive role for PTRF/Cavin‐1."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Finally, proteomic studies in lung cancer have identified PTRF/Cavin‐1 as a differentially expressed biomarker, while animal models lacking PTRF/Cavin‐1 display marked defects in adipocyte function and energy metabolism, underscoring its broad physiological significance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, PTRF/Cavin‐1 is a central orchestrator of caveola structure and function. By recruiting and stabilizing caveolins at the plasma membrane, it regulates key processes such as membrane repair, signal transduction, and exosome-mediated intercellular communication. Disruption of PTRF/Cavin‐1 not only impairs caveola formation but also contributes to diverse human diseases ranging from metabolic and muscular disorders to cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michelle M Hill, Michele Bastiani, Robert Luetterforst, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PTRF-Cavin, a conserved cytoplasmic protein required for caveola formation and function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2007.11.042"}], "href": "https://doi.org/10.1016/j.cell.2007.11.042"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18191225"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18191225"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Michele Bastiani, Libin Liu, Michelle M Hill, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MURC/Cavin-4 and cavin family members form tissue-specific caveolar complexes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200903053"}], "href": "https://doi.org/10.1083/jcb.200903053"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19546242"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19546242"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yukiko K Hayashi, Chie Matsuda, Megumu Ogawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human PTRF mutations cause secondary deficiency of caveolins resulting in muscular dystrophy with generalized lipodystrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI38660"}], "href": "https://doi.org/10.1172/JCI38660"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19726876"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19726876"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Anna Rajab, Volker Straub, Liza J McCann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Fatal cardiac arrhythmia and long-QT syndrome in a new form of congenital generalized lipodystrophy with muscle rippling (CGL4) due to PTRF-CAVIN mutations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1000874"}], "href": "https://doi.org/10.1371/journal.pgen.1000874"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20300641"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20300641"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Savitha Shastry, Mauricio R Delgado, Eray Dirik, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Congenital generalized lipodystrophy, type 4 (CGL4) associated with myopathy due to novel PTRF mutations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet A (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.a.33578"}], "href": "https://doi.org/10.1002/ajmg.a.33578"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20684003"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20684003"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Lin Bai, Xiaoli Deng, Juanjuan Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of cellular senescence by the essential caveolar component PTRF/Cavin-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cr.2011.56"}], "href": "https://doi.org/10.1038/cr.2011.56"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21445100"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21445100"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Hua Zhu, Peihui Lin, Gejing De, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Polymerase transcriptase release factor (PTRF) anchors MG53 protein to cell injury site for initiation of membrane repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.C111.221440"}], "href": "https://doi.org/10.1074/jbc.C111.221440"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21343302"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21343302"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Kai Huang, Chuan Fang, Kaikai Yi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The role of PTRF/Cavin1 as a biomarker in both glioma and serum exosomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Theranostics (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/thno.22952"}], "href": "https://doi.org/10.7150/thno.22952"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29556340"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29556340"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "H Moon, C S Lee, K L Inder, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PTRF/cavin-1 neutralizes non-caveolar caveolin-1 microdomains in prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2013.315"}], "href": "https://doi.org/10.1038/onc.2013.315"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23934189"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23934189"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Cho Sanda Aung, Michelle M Hill, Michele Bastiani, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PTRF-cavin-1 expression decreases the migration of PC3 prostate cancer cells: role of matrix metalloprotease 9."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Cell Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejcb.2010.06.004"}], "href": "https://doi.org/10.1016/j.ejcb.2010.06.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20732728"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20732728"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Angelo Gámez-Pozo, Iker Sánchez-Navarro, Enrique Calvo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PTRF/cavin-1 and MIF proteins are identified as non-small cell lung cancer biomarkers by label-free proteomics."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0033752"}], "href": "https://doi.org/10.1371/journal.pone.0033752"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22461895"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22461895"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Shi-Ying Ding, Mi-Jeong Lee, Ross Summer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pleiotropic effects of cavin-1 deficiency on lipid metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M113.546242"}], "href": "https://doi.org/10.1074/jbc.M113.546242"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24509860"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24509860"}]}]}]}
NCBI Gene ID 284119
API
Download Associations
Predicted Functions View CAVIN1's ARCHS4 Predicted Functions.
Co-expressed Genes View CAVIN1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CAVIN1's ARCHS4 Predicted Functions.

Functional Associations

CAVIN1 has 7,711 functional associations with biological entities spanning 5 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 49 datasets.

Click the + buttons to view associations for CAVIN1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CAVIN1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of CAVIN1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CCLE Cell Line Proteomics Cell lines associated with CAVIN1 protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with CAVIN1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of CAVIN1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
ClinVar Gene-Phenotype Associations 2025 phenotypes associated with CAVIN1 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CAVIN1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
CM4AI U2OS Cell Map Protein Localization Assemblies assemblies containing CAVIN1 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing CAVIN1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing CAVIN1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with CAVIN1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by CAVIN1 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving CAVIN1 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with CAVIN1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with CAVIN1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with CAVIN1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with CAVIN1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Biological Process Annotations 2023 biological processes involving CAVIN1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving CAVIN1 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing CAVIN1 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing CAVIN1 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by CAVIN1 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by CAVIN1 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of CAVIN1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with CAVIN1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with CAVIN1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CAVIN1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of CAVIN1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of CAVIN1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of CAVIN1 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by CAVIN1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of CAVIN1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of CAVIN1 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
PFOCR Pathway Figure Associations 2023 pathways involving CAVIN1 protein from the PFOCR Pathway Figure Associations 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving CAVIN1 protein from the Wikipathways PFOCR 2024 dataset.
Reactome Pathways 2024 pathways involving CAVIN1 protein from the Reactome Pathways 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of CAVIN1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of CAVIN1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of CAVIN1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CAVIN1 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CAVIN1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CAVIN1 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sanger Dependency Map Cancer Cell Line Proteomics cell lines associated with CAVIN1 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of CAVIN1 gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of CAVIN1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CAVIN1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CAVIN1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with CAVIN1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving CAVIN1 protein from the WikiPathways Pathways 2024 dataset.