CBLIF Gene

Name cobalamin binding intrinsic factor
Description This gene is a member of the cobalamin transport protein family. It encodes a glycoprotein secreted by parietal cells of the gastric mucosa and is required for adequate absorption of vitamin B12. Vitamin B12 is necessary for erythrocyte maturation and mutations in this gene may lead to congenital pernicious anemia. [provided by RefSeq, Jul 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Gastric intrinsic factor (GIF), sometimes referred to in the context of cobalamin‐binding intrinsic factor (CBLIF), is a glycoprotein secreted primarily by the stomach’s parietal cells that plays an essential role in the absorption of vitamin B12 (cobalamin) from the gastrointestinal tract. In the acidic gastric environment, GIF binds dietary cobalamin, thereby protecting it from degradation and enabling its subsequent uptake in the distal ileum via a receptor complex formed by cubilin and amnionless."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Structural studies have revealed that GIF interacts with cobalamin and the binding domains of cubilin in a calcium‐dependent manner, thus facilitating a tightly regulated ligand–receptor coupling mechanism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Genetic and molecular studies have demonstrated that mutations in the GIF gene result in congenital intrinsic factor deficiency, leading to malabsorption of vitamin B12, megaloblastic anemia, and neurological abnormalities."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "6"}]}, {"type": "t", "text": " In addition, genome‐wide and clinical studies have linked variations in GIF – along with other factors such as FUT2 – to altered vitamin B12 status, which may predispose to conditions as diverse as neural tube defects and pernicious anemia."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "9"}]}, {"type": "t", "text": " Furthermore, transcriptome analyses in certain gastric lesions have shown profound down‐regulation of GIF expression, emphasizing its role in gastrointestinal physiology and its potential contribution to disease when misregulated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Finally, comprehensive reviews of autoimmune gastritis and pernicious anemia have underscored the historical and clinical importance of GIF in ensuring efficient cobalamin uptake and protecting against vitamin B12 deficiency."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Christian Brix Folsted Andersen, Mette Madsen, Tina Storm, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural basis for receptor recognition of vitamin-B(12)-intrinsic factor complexes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature08874"}], "href": "https://doi.org/10.1038/nature08874"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20237569"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20237569"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Obaidullah Aseem, Jeremy L Barth, Sandra C Klatt, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cubilin expression is monoallelic and epigenetically augmented via PPARs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2164-14-405"}], "href": "https://doi.org/10.1186/1471-2164-14-405"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23773363"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23773363"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Stephan M Tanner, Amy C Sturm, Elizabeth C Baack, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inherited cobalamin malabsorption. Mutations in three genes reveal functional and ethnic patterns."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Orphanet J Rare Dis (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1750-1172-7-56"}], "href": "https://doi.org/10.1186/1750-1172-7-56"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22929189"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22929189"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Marilyn M Gordon, Nancy Brada, Angel Remacha, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A genetic polymorphism in the coding region of the gastric intrinsic factor gene (GIF) is associated with congenital intrinsic factor deficiency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mutat (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/humu.10297"}], "href": "https://doi.org/10.1002/humu.10297"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14695536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14695536"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Cameron M Beech, Sandya Liyanarachchi, Nidhi P Shah, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ancient founder mutation is responsible for Imerslund-Gräsbeck Syndrome among diverse ethnicities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Orphanet J Rare Dis (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1750-1172-6-74"}], "href": "https://doi.org/10.1186/1750-1172-6-74"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22078000"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22078000"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Fawwaz Yassin, Sheldon P Rothenberg, Sreedhar Rao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a 4-base deletion in the gene in inherited intrinsic factor deficiency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2003-07-2239"}], "href": "https://doi.org/10.1182/blood-2003-07-2239"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14576042"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14576042"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Celine Chery, Alain Hehn, Nadir Mrabet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gastric intrinsic factor deficiency with combined GIF heterozygous mutations and FUT2 secretor variant."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochimie (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biochi.2013.01.022"}], "href": "https://doi.org/10.1016/j.biochi.2013.01.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23402911"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23402911"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "R M Guéant-Rodriguez, C Chery, B-M Caillierez-Fofou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of combined GIF290T>C heterozygous mutation/FUT2 secretor variant with neural tube defects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cge.13104"}], "href": "https://doi.org/10.1111/cge.13104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28742214"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28742214"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "S Mrabet, F Ellouze, S Ellini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[Neuropsychiatric manifestations ushering pernicious anemia]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Encephale (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.encep.2015.07.004"}], "href": "https://doi.org/10.1016/j.encep.2015.07.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26345354"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26345354"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Kang Li, Luobu Gesang, Zeng Dan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptome Reveals 1400-Fold Upregulation of APOA4-APOC3 and 1100-Fold Downregulation of GIF in the Patients with Polycythemia-Induced Gastric Injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0140534"}], "href": "https://doi.org/10.1371/journal.pone.0140534"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26485402"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26485402"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Senga Whittingham, Ian R Mackay "}, {"type": "b", "children": [{"type": "t", "text": "Autoimmune gastritis: historical antecedents, outstanding discoveries, and unresolved problems."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int Rev Immunol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/08830180590884413"}], "href": "https://doi.org/10.1080/08830180590884413"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15763987"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15763987"}]}]}]}
NCBI Gene ID 2694
API
Download Associations
Predicted Functions View CBLIF's ARCHS4 Predicted Functions.
Co-expressed Genes View CBLIF's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CBLIF's ARCHS4 Predicted Functions.

Functional Associations

CBLIF has 1,650 functional associations with biological entities spanning 5 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.

Click the + buttons to view associations for CBLIF from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of CBLIF gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CellMarker Gene-Cell Type Associations cell types associated with CBLIF gene from the CellMarker Gene-Cell Type Associations dataset.
ClinVar Gene-Phenotype Associations 2025 phenotypes associated with CBLIF gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CBLIF gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing CBLIF protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with CBLIF protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with CBLIF gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving CBLIF gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing CBLIF protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of CBLIF gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with CBLIF gene from the HuBMAP Azimuth Cell Type Annotations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CBLIF gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of CBLIF gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving CBLIF protein from the KEGG Pathways 2026 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of CBLIF gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
Reactome Pathways 2024 pathways involving CBLIF protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CBLIF gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CBLIF gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CBLIF gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CBLIF protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CBLIF protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with CBLIF protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving CBLIF protein from the WikiPathways Pathways 2024 dataset.