| Name | CBR3 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have identified the long non‐coding RNA CBR3‐AS1 as a critical regulator in several human malignancies. In osteosarcoma, CBR3‐AS1 is found to be highly expressed and is associated with advanced clinical stage, distant metastasis, and poor patient prognosis; functional assays have shown that its knockdown suppresses cell proliferation, migration, and invasion while promoting apoptosis in osteosarcoma cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In breast cancer, elevated CBR3‐AS1 levels have been correlated with unfavorable clinical outcomes and resistance to chemotherapeutic agents such as adriamycin. Mechanistically, CBR3‐AS1 acts as a competing endogenous RNA by sponging miR‐25‐3p, thereby activating downstream MAPK pathway components (MEK4 and JNK1) that contribute to chemoresistance"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "; similar oncogenic properties were observed in breast cancer where high CBR3‐AS1 expression rendered promising biomarker potential"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In non‐small cell lung cancer (NSCLC), CBR3‐AS1 is overexpressed and correlates with larger tumor size, advanced stage, and increased lymph node metastasis. Functional studies indicate that CBR3‐AS1 promotes cell proliferation, invasion, and migration by acting as a sponge for miR‐509‐3p, subsequently upregulating the expression of histone deacetylase 9 (HDAC9)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Moreover, in another NSCLC study, CBR3‐AS1 was shown to negatively impact radiosensitivity via a mechanism involving the miR‐409‐3p/SOD1 axis, where its downregulation enhanced DNA damage responses and increased reactive oxygen species production."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Interestingly, in colorectal cancer, the role of CBR3‐AS1 appears to be context dependent. One report demonstrated that CBR3‐AS1 is downregulated in colorectal cancer tissues and acts to inhibit cell migration and invasion by sponging miR‐29a."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " This tissue‐specific difference suggests that CBR3‐AS1 may possess divergent functions depending on the cellular context. Overall, these findings highlight CBR3‐AS1 as an oncogenic lncRNA in many cancers with potential diagnostic and therapeutic implications.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yunxing Zhang, Wang Meng, Hongxia Cui "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA CBR3-AS1 predicts unfavorable prognosis and promotes tumorigenesis in osteosarcoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2018.02.081"}], "href": "https://doi.org/10.1016/j.biopha.2018.02.081"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29554595"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29554595"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ming Zhang, Yan Wang, Longyang Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA CBR3-AS1 regulates of breast cancer drug sensitivity as a competing endogenous RNA through the JNK1/MEK4-mediated MAPK signal pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-021-01844-7"}], "href": "https://doi.org/10.1186/s13046-021-01844-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33494806"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33494806"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Safora Torkashvand, Ali Basi, Hossein Ajdarkosh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNAs Expression in Breast Cancer: CBR3-AS1 LncRNA as a Sensitive Biomarker."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Asian Pac J Cancer Prev (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.31557/APJCP.2021.22.9.2897"}], "href": "https://doi.org/10.31557/APJCP.2021.22.9.2897"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34582659"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34582659"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Lingyun Xu, Hong Zhu, Fei Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulation of the long non-coding RNA CBR3-AS1 predicts tumor prognosis and contributes to breast cancer progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene X (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2019.100014"}], "href": "https://doi.org/10.1016/j.gene.2019.100014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32550547"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32550547"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yun Guan, Juan Yang, Xinmei Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA CBR3 antisense RNA 1 promotes the aggressive phenotypes of non‑small‑cell lung cancer by sponging microRNA‑509‑3p and competitively upregulating HDAC9 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2020.7719"}], "href": "https://doi.org/10.3892/or.2020.7719"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32945466"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32945466"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Shilong Liu, Ning Zhan, Chunzi Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA CBR3-AS1 mediates tumorigenesis and radiosensitivity of non-small cell lung cancer through redox and DNA repair by CBR3-AS1 /miR-409-3p/SOD1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2021.11.009"}], "href": "https://doi.org/10.1016/j.canlet.2021.11.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34801596"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34801596"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Mei Yang, Wenxi Chen, Haojie Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-coding RNA CBR3 Antisense RNA 1 is Downregulated in Colorectal Cancer and Inhibits miR-29a-Mediated Cell Migration and Invasion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biotechnol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12033-021-00444-2"}], "href": "https://doi.org/10.1007/s12033-021-00444-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35107754"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35107754"}]}]}]}
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| Synonyms | PLNCRNA-1, PLNCRNA1 |
| NCBI Gene ID | 100506428 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CBR3-AS1 has 900 functional associations with biological entities spanning 6 categories (organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.
Click the + buttons to view associations for CBR3-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of CBR3-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of CBR3-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of CBR3-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of CBR3-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with CBR3-AS1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of CBR3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of CBR3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of CBR3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of CBR3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of CBR3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of CBR3-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CBR3-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of CBR3-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of CBR3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of CBR3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of CBR3-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of CBR3-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |