| HGNC Family | Non-coding RNAs |
| Name | colon cancer associated transcript 1 (non-protein coding) |
| Description | This gene produces a long non-coding RNA that promotes tumor formation and is upregulated in colon cancer and other cancer cell types. This transcript may regulate long range chromosomal interactions, including at the Myc oncoprotein locus. This RNA may also function as a molecular sponge for microRNAs. [provided by RefSeq, Dec 2017] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The long noncoding RNA "}, {"type": "b", "children": [{"type": "t", "text": "CCAT1"}]}, {"type": "t", "text": " has emerged as a multifunctional oncogene whose abnormal overexpression is observed in a variety of cancers. In colorectal cancer, a long‐isoform designated CCAT1‑L is transcribed from a super‐enhancer region upstream of MYC, where it promotes long‐range chromatin interactions through binding with architectural proteins such as CTCF, thereby enhancing MYC transcription."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In gallbladder cancer, CCAT1 functions as a competing endogenous RNA (ceRNA) that “sponges” miR‑218‑5p to de‐repress BMI1 expression, contributing to increased proliferation and invasiveness."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In colorectal tumors, high expression of CCAT1 from a super‐enhancer has also been linked to BET inhibitor sensitivity, underscoring its potential as a prognostic biomarker and therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In acute myeloid leukemia, CCAT1 promotes cell growth and represses monocytic differentiation by sequestering tumor–suppressive miR‑155, which leads to upregulation of oncogenic factors including MYC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In glioma, CCAT1 is overexpressed and acts as a ceRNA for miR‑181b, thereby lifting repression on targets such as FGFR3 and PDGFRα to enhance cell proliferation, migration, and epithelial–mesenchymal transition (EMT)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Similarly, in intrahepatic cholangiocarcinoma, elevated CCAT1 levels facilitate migration and EMT by sponging miR‑152."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n CCAT1 upregulation is also notable in castration–resistant prostate cancer, where its high expression correlates with increased mortality."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " In esophageal squamous cell carcinoma, CCAT1 enhances chemoresistance to cisplatin by targeting miR‑143 and modulating downstream effectors such as PLK1 and BUBR1"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": ", while in gastric cancer it regulates cell migration by interacting with miR‑490 to control hnRNPA1 expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Finally, pan–cancer analyses further support an oncogenic role for CCAT1, highlighting its consistent overexpression and association with poor clinical outcome across multiple tumor types."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Overall, these findings indicate that CCAT1 exerts its oncogenic effects through dual mechanisms: first, by modulating chromatin architecture and transcription of key oncogenes such as MYC, and second, by functioning as a ceRNA that sequesters specific microRNAs, thereby de–repressing multiple oncogenic pathways. These multifaceted roles not only contribute to enhanced proliferation, invasion, metastasis, and chemoresistance but also nominate CCAT1 as a potential biomarker and target for therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jian-Feng Xiang, Qing-Fei Yin, Tian Chen, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15476286.2015.1038012"}], "href": "https://doi.org/10.1080/15476286.2015.1038012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25864709"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25864709"}]}]}]}
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| Synonyms | CARLO-5, onco-lncRNA-40, CARLO5 |
| NCBI Gene ID | 100507056 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CCAT1 has 202 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.
Click the + buttons to view associations for CCAT1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of CCAT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with CCAT1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of CCAT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of CCAT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of CCAT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |