CCDC13-AS1 Gene

Name CCDC13 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In a recent transcriptome profiling study of Alzheimer’s disease (AD) that explored the dysregulation of long non‐coding RNAs (lncRNAs) and protein-coding genes (PCGs) in brain tissue, a wide array of lncRNAs were identified as either up-regulated or down-regulated in AD relative to normal brain specimens (1). Although the study provided valuable insights into the potential roles of several lncRNAs in AD pathogenesis—highlighting candidates such as RP3-522J7, MIR3180-2, and MIR3180-3 due to their co-expression with known AD risk genes and enrichment in brain-related functions—it did not specifically address or characterize the function of the lncRNA CCDC13-AS1. Consequently, within the context of this analysis, the function of CCDC13-AS1 remains undetermined, and its role in AD or related biological processes has yet to be elucidated.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Further investigations will be necessary to define whether CCDC13-AS1 contributes to the molecular mechanisms underlying AD pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuchen Shi, Hui Liu, Changbo Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptomic Analyses for Identification and Prioritization of Genes Associated With Alzheimer's Disease in Humans."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Bioeng Biotechnol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fbioe.2020.00031"}], "href": "https://doi.org/10.3389/fbioe.2020.00031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32154224"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32154224"}]}]}]}
NCBI Gene ID 100874114
API
Download Associations
Predicted Functions View CCDC13-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View CCDC13-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CCDC13-AS1's ARCHS4 Predicted Functions.

Functional Associations

CCDC13-AS1 has 731 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for CCDC13-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of CCDC13-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CCDC13-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CCDC13-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CCDC13-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of CCDC13-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CCDC13-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of CCDC13-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of CCDC13-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.