| Name | cellular communication network factor 3 |
| Description | The protein encoded by this gene is a small secreted cysteine-rich protein and a member of the CCN family of regulatory proteins. CNN family proteins associate with the extracellular matrix and play an important role in cardiovascular and skeletal development, fibrosis and cancer development. [provided by RefSeq, Feb 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CCN3 (also known as NOV) is a multifunctional matricellular protein that regulates diverse cellular processes in development, tissue homeostasis, and disease. CCN3 can modulate cell differentiation and lineage commitment via interactions with key signaling pathways; for example, its binding to Notch1 enhances Notch signaling and suppresses myogenesis in mesenchymal cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In endothelial cells, CCN3 directly promotes adhesion, chemotaxis, and survival by engaging several integrin receptors, thereby acting as a potent inducer of angiogenesis in vivo."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In neural and glial cell contexts, CCN3 is up‐regulated in response to connexin43 expression, where it physically associates with the C‐terminal domain of Cx43 and contributes to growth control, further supporting its role as a modulator of intercellular communication."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In cutaneous wound healing, CCN3 is highly expressed in granulation tissue and acts on skin fibroblasts to support adhesion and directed migration through integrin engagement, while also modulating gene expression in concert with TGF‑β1 signals."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In the musculoskeletal system, CCN3 expression correlates with tumor differentiation and a higher metastatic risk in Ewing’s sarcoma, and, in cartilage, its upregulation in the absence of CCN2 is associated with reduced proliferation and delayed terminal differentiation, suggesting that CCN3 may antagonize CCN2‐mediated chondrocyte maturation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Furthermore, CCN3 plays an essential role in the regulation of human hematopoietic stem and progenitor cells, as its deficiency impairs stem cell function while its forced expression enhances primitive cellular activity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " In cancer, CCN3 secreted by prostate tumor cells can modulate the tumor microenvironment by recruiting macrophages and skewing them toward a proangiogenic M2 phenotype, thereby contributing to tumor invasion and neovascularization."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Moreover, genetic studies in mice reveal that loss or mutation of CCN3 results in multiple developmental defects – including skeletal malformations, cardiomyopathy, muscle atrophy, and lens degeneration – underscoring its critical role in organogenesis and tissue integrity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Finally, in vascular smooth muscle cells, CCN3 suppresses cell proliferation and migration, thereby limiting neointimal thickening following vascular injury and highlighting its importance in maintaining vascular homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kei Sakamoto, Shunji Yamaguchi, R Ando, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The nephroblastoma overexpressed gene (NOV/ccn3) protein associates with Notch1 extracellular domain and inhibits myoblast differentiation via Notch signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M203727200"}], "href": "https://doi.org/10.1074/jbc.M203727200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12050162"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12050162"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Cristiane G Lin, Shr-Jeng Leu, Ningyu Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CCN3 (NOV) is a novel angiogenic regulator of the CCN protein family."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M302028200"}], "href": "https://doi.org/10.1074/jbc.M302028200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12695522"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12695522"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Christine T Fu, John F Bechberger, Mark A Ozog, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CCN3 (NOV) interacts with connexin43 in C6 glioma cells: possible mechanism of connexin-mediated growth suppression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M403952200"}], "href": "https://doi.org/10.1074/jbc.M403952200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15213231"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15213231"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Alexandra Gellhaus, Xuesen Dong, Sven Propson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Connexin43 interacts with NOV: a possible mechanism for negative regulation of cell growth in choriocarcinoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M404073200"}], "href": "https://doi.org/10.1074/jbc.M404073200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15181016"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15181016"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Cristiane G Lin, Chih-Chiun Chen, Shr-Jeng Leu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrin-dependent functions of the angiogenic inducer NOV (CCN3): implication in wound healing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M404903200"}], "href": "https://doi.org/10.1074/jbc.M404903200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15611078"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15611078"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Maria Cristina Manara, Bernard Perbal, Stefania Benini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The expression of ccn3(nov) gene in musculoskeletal tumors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Pathol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/S0002-9440(10)64908-5"}], "href": "https://doi.org/10.1016/S0002-9440(10"}, {"type": "t", "text": "64908-5) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11891184"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11891184"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Harumi Kawaki, Satoshi Kubota, Akiko Suzuki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cooperative regulation of chondrocyte differentiation by CCN2 and CCN3 shown by a comprehensive analysis of the CCN family proteins in cartilage."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Bone Miner Res (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1359/jbmr.080615"}], "href": "https://doi.org/10.1359/jbmr.080615"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18597638"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18597638"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Rajeev Gupta, Dengli Hong, Francisco Iborra, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NOV (CCN3) functions as a regulator of human hematopoietic stem or progenitor cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1136031"}], "href": "https://doi.org/10.1126/science.1136031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17463287"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17463287"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Po-Chun Chen, Hsu-Chen Cheng, John Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prostate cancer-derived CCN3 induces M2 macrophage infiltration and contributes to angiogenesis in prostate cancer microenvironment."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.1570"}], "href": "https://doi.org/10.18632/oncotarget.1570"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24721786"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24721786"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Emma Heath, Dalal Tahri, Elisabetta Andermarcher, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Abnormal skeletal and cardiac development, cardiomyopathy, muscle atrophy and cataracts in mice with a targeted disruption of the Nov (Ccn3) gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Dev Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-213X-8-18"}], "href": "https://doi.org/10.1186/1471-213X-8-18"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18289368"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18289368"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Tatsushi Shimoyama, Shûichi Hiraoka, Minoru Takemoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CCN3 inhibits neointimal hyperplasia through modulation of smooth muscle cell growth and migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.110.203356"}], "href": "https://doi.org/10.1161/ATVBAHA.110.203356"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20139355"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20139355"}]}]}]}
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| NCBI Gene ID | 4856 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CCN3 has 3,927 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 38 datasets.
Click the + buttons to view associations for CCN3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of CCN3 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with CCN3 protein from the CCLE Cell Line Proteomics dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with CCN3 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of CCN3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of CCN3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing CCN3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 | cellular components containing CCN3 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with CCN3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of CCN3 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by CCN3 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with CCN3 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with CCN3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GlyGen Glycosylated Proteins | ligands (chemical) binding CCN3 protein from the GlyGen Glycosylated Proteins dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving CCN3 gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving CCN3 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing CCN3 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing CCN3 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by CCN3 gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by CCN3 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of CCN3 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of CCN3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by CCN3 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of CCN3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of CCN3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of CCN3 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LINCS L1000 CMAP CRISPR Knockout Consensus Signatures | gene perturbations changing expression of CCN3 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by CCN3 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of CCN3 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of CCN3 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving CCN3 protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving CCN3 protein from the Wikipathways PFOCR 2024 dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of CCN3 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of CCN3 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of CCN3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of CCN3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of CCN3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of CCN3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with CCN3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |