CD27-AS1 Gene

Name CD27 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA CD27‐AS1 has emerged as an oncogenic regulator in several cancer types through distinct molecular mechanisms. In acute myeloid leukemia, CD27‐AS1 is markedly overexpressed and its high levels correlate with poor overall survival. Functional studies revealed that CD27‐AS1 acts as a competing endogenous RNA by sponging miR‐224‐5p, thereby enhancing PBX3 expression and activating downstream MAPK signaling, which promotes cell proliferation and survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In melanoma, a specific nuclear‐localized isoform, CD27‐AS1‑208, facilitates tumor progression by directly interacting with STAT3; this interaction leads to increased melanoma cell proliferation, invasion, and migration via a STAT3‐dependent mechanism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, CD27‐AS1 has been identified as a component of multi‐RNA prognostic signatures in cervical cancer and colon adenocarcinoma, where its differential expression is associated with disease recurrence and reduced disease‐free survival, underlining its potential as a valuable prognostic biomarker"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ";."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, CD27‐AS1 is involved in fusion gene events, as evidenced by its participation in a VAMP1–CD27‐AS1 conjoined transcript identified in non‐Hodgkin B‐cell lymphoma, suggesting that aberrant splicing or fusion events may further contribute to oncogenic processes in specific contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yanling Tao, Jingjing Zhang, Lulu Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA CD27-AS1 promotes acute myeloid leukemia progression through the miR-224-5p/PBX3 signaling circuit."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-021-03767-9"}], "href": "https://doi.org/10.1038/s41419-021-03767-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34006845"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34006845"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jingjing Ma, Qiong Shi, Sen Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA CD27-AS1-208 Facilitates Melanoma Progression by Activating STAT3 Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.818178"}], "href": "https://doi.org/10.3389/fonc.2021.818178"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35096622"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35096622"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mengxiong Li, Xiaohui Tian, Hongling Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel lncRNA-mRNA-miRNA signature predicts recurrence and disease-free survival in cervical cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Braz J Med Biol Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1590/1414-431X2021e11592"}], "href": "https://doi.org/10.1590/1414-431X2021e11592"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34550275"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34550275"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Weige Zhou, Shijing Zhang, Hui-Biao Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Development of Prognostic Indicator Based on Autophagy-Related lncRNA Analysis in Colon Adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/9807918"}], "href": "https://doi.org/10.1155/2020/9807918"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32964050"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32964050"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yosuke Matsumoto, Taku Tsukamoto, Yoshiaki Chinen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Detection of novel and recurrent conjoined genes in non-Hodgkin B-cell lymphoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Exp Hematop (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3960/jslrt.20033"}], "href": "https://doi.org/10.3960/jslrt.20033"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33883344"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33883344"}]}]}]}
NCBI Gene ID 678655
API
Download Associations
Predicted Functions View CD27-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View CD27-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CD27-AS1's ARCHS4 Predicted Functions.

Functional Associations

CD27-AS1 has 941 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for CD27-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CD27-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of CD27-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CD27-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CD27-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with CD27-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CD27-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of CD27-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CD27-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CD27-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CD27-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CD27-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of CD27-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with CD27-AS1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CD27-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of CD27-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of CD27-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.