| Name | CDAN1 interacting nuclease 1 |
| Description | This gene encodes a protein with two predicted helix-turn-helix domains. Mutations in this gene were found in families with congenital dyserythropoietic anemia type Ib. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2014] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Congenital dyserythropoietic anemia type I (CDA‐I) is now known to be caused by biallelic mutations in two genes of previously unknown function: CDAN1 and CDIN1 (formerly known as C15orf41)."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n The CDIN1 gene product is predicted to be a novel nuclease belonging to the Holliday junction resolvase family, and its biochemical characteristics suggest a role in DNA or chromatin processing.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n At the cellular level, CDIN1 is predominantly nuclear and forms a nearly stoichiometric complex with Codanin-1—the protein encoded by CDAN1. This interaction not only stabilizes CDIN1 but also appears to regulate its subcellular localization, as overexpression of Codanin-1 can shift CDIN1 from the nucleus to the cytoplasm."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n Moreover, studies using erythroid culture systems have demonstrated that disruption of CDIN1 function delays terminal erythroid differentiation, alters chromatin accessibility, and is associated with abnormal nucleolar structure—features that underlie ineffective erythropoiesis in CDA‐I."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Interestingly, beyond its established role in erythropoiesis, recent whole‐genome sequencing studies have implicated rare variants mapping to CDIN1 in Alzheimer’s disease risk, suggesting that the protein may also participate in broader cellular pathways—potentially in RNA metabolism and synaptic function—similar to scaffold proteins such as CNOT1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings indicate that CDIN1 functions as a critical regulator in erythroid cell maturation by coordinating chromatin replication and possibly RNA processing. Its interaction with Codanin-1 appears to be essential for maintaining normal nuclear architecture and effective red blood cell production; disruption of this pathway leads to the characteristic ineffective erythropoiesis observed in CDA‐I.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Caroline Scott, Damien J Downes, Jill M Brown, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Recapitulation of erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I) identifies defects in differentiation and nucleolar abnormalities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Haematologica (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3324/haematol.2020.260158"}], "href": "https://doi.org/10.3324/haematol.2020.260158"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33121234"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33121234"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Maithili Shroff, Axel Knebel, Rachel Toth, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A complex comprising C15ORF41 and Codanin-1: the products of two genes mutated in congenital dyserythropoietic anaemia type I (CDA-I)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BCJ20190944"}], "href": "https://doi.org/10.1042/BCJ20190944"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32239177"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32239177"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Grace Swickley, Yehoshua Bloch, Lidor Malka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of the interactions between Codanin-1 and C15Orf41, two proteins implicated in congenital dyserythropoietic anemia type I disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Mol Cell Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12860-020-00258-1"}], "href": "https://doi.org/10.1186/s12860-020-00258-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32293259"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32293259"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Md Shakil Ahmed, Md Shahjaman, Enamul Kabir, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure modeling to function prediction of Uncharacterized Human Protein C15orf41."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioinformation (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.6026/97320630014206"}], "href": "https://doi.org/10.6026/97320630014206"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30108417"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30108417"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Dmitry Prokopenko, Sarah L Morgan, Kristina Mullin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Alzheimers Dement (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/alz.12319"}], "href": "https://doi.org/10.1002/alz.12319"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33797837"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33797837"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Dmitry Prokopenko, Sarah L Morgan, Kristina Mullin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "medRxiv (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/2020.11.03.20225540"}], "href": "https://doi.org/10.1101/2020.11.03.20225540"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33173892"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33173892"}]}]}]}
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| NCBI Gene ID | 84529 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CDIN1 has 974 functional associations with biological entities spanning 6 categories (disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 19 datasets.
Click the + buttons to view associations for CDIN1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CDIN1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| ClinVar Gene-Phenotype Associations 2025 | phenotypes associated with CDIN1 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of CDIN1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving CDIN1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing CDIN1 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of CDIN1 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of CDIN1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of CDIN1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with CDIN1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by CDIN1 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of CDIN1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of CDIN1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of CDIN1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of CDIN1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of CDIN1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of CDIN1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of CDIN1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of CDIN1 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of CDIN1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |