CDKN2A-AS1 Gene

Name CDKN2A antisense RNA 1 (head to head)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CDKN2A‐AS1, also known as ANRIL, is a long non‐coding RNA that has been implicated in several disease processes. In the context of cardiovascular disease, risk alleles at the 9p21 locus are associated with increased expression of specific CDKN2A‐AS1/ANRIL transcripts in blood and atherosclerotic plaque tissue, with levels correlating with atherosclerosis severity. These observations suggest that altered regulation of CDKN2A‐AS1 may contribute to the pathogenesis of coronary artery disease by affecting vascular inflammation and cellular proliferation mechanisms."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In ovarian cancer, CDKN2A‐AS1 is markedly upregulated in tumors and cancer cell lines. Functional investigations have demonstrated that CDKN2A‐AS1 directly binds to SOSTDC1, a negative regulator of the bone morphogenetic protein (BMP)–SMAD signaling pathway. The resulting downregulation of SOSTDC1 leads to upregulation of BMP ligands and SMAD activation, thereby promoting proliferation, migration, and invasion of ovarian cancer cells and driving tumor growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n CDKN2A‐AS1 has also been identified as a candidate gene within risk loci for endometriosis, suggesting that dysregulation of this lncRNA may play a role in the altered gene regulatory networks underlying endometriosis susceptibility, although further functional studies are required to fully elucidate its mechanistic contribution."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In lung adenocarcinoma, elevated levels of CDKN2A‐AS1 have been incorporated into lncRNA prognostic signatures and are associated with poor overall survival. This implies that, in the lung cancer setting, CDKN2A‐AS1 may function in an oncogenic capacity and serve as a potential biomarker for patient stratification."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Overall, these studies indicate that CDKN2A‐AS1 acts in a context‐dependent manner—increasing cardiovascular risk through its association with atherosclerosis, promoting tumor progression in ovarian cancer via BMP–SMAD pathway modulation, and correlating with adverse prognosis in lung adenocarcinoma—while emerging evidence also points to a potential role in endometriosis.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lesca M Holdt, Frank Beutner, Markus Scholz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ANRIL expression is associated with atherosclerosis risk at chromosome 9p21."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.109.196832"}], "href": "https://doi.org/10.1161/ATVBAHA.109.196832"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20056914"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20056914"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Qing Zhao, Dandan Dong, Huihui Chu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA CDKN2A-AS1 facilitates tumorigenesis and progression of epithelial ovarian cancer via modulating the SOSTDC1-mediated BMP-SMAD signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384101.2021.1924947"}], "href": "https://doi.org/10.1080/15384101.2021.1924947"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34110955"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34110955"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jenny N Fung, Grant W Montgomery "}, {"type": "b", "children": [{"type": "t", "text": "Genetics of endometriosis: State of the art on genetic risk factors for endometriosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Best Pract Res Clin Obstet Gynaecol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bpobgyn.2018.01.012"}], "href": "https://doi.org/10.1016/j.bpobgyn.2018.01.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29506960"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29506960"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Bing Liu, Yifei Chen, Jiong Yang "}, {"type": "b", "children": [{"type": "t", "text": "LncRNAs are altered in lung squamous cell carcinoma and lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.13651"}], "href": "https://doi.org/10.18632/oncotarget.13651"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27903974"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27903974"}]}]}]}
Synonyms CDKN2A-DT, BA149I2.3, C9ORF53
Proteins NSGX_HUMAN
NCBI Gene ID 51198
API
Download Associations
Predicted Functions View CDKN2A-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View CDKN2A-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CDKN2A-AS1's ARCHS4 Predicted Functions.

Functional Associations

CDKN2A-AS1 has 1,210 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 29 datasets.

Click the + buttons to view associations for CDKN2A-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CDKN2A-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of CDKN2A-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CDKN2A-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of CDKN2A-AS1 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of CDKN2A-AS1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CDKN2A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of CDKN2A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CDKN2A-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of CDKN2A-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores diseases co-occuring with CDKN2A-AS1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CDKN2A-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CDKN2A-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CDKN2A-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with CDKN2A-AS1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing CDKN2A-AS1 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of CDKN2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of CDKN2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CDKN2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of CDKN2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of CDKN2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CDKN2A-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with CDKN2A-AS1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of CDKN2A-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CDKN2A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of CDKN2A-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CDKN2A-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Protein Ligands ligand (protein) perturbations changing phosphorylation of CDKN2A-AS1 protein from the SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Protein Ligands dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of CDKN2A-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores tissues co-occuring with CDKN2A-AS1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.