| Name | CMT1A duplicated region transcript 7 (non-protein coding) |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have underscored the importance of molecular precision in clinical diagnostics and prognostication. For example, research on breast cancer HER2 testing revealed that the use of alternative control probes in fluorescence in situ hybridization (FISH) can falsely elevate HER2 ratios due to heterozygous deletions in control genomic sites, leading to potential misclassification of tumors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, chromosomal microarray analysis has demonstrated that absence of mosaicism in peripheral blood does not always reflect its status in other tissues, emphasizing the need for comprehensive molecular assessments."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the context of glioma, an integrated risk assessment model incorporating a panel of five long non‑coding RNAs—including CDRT7—has emerged as a promising prognostic tool."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Within this model, CDRT7 is co‑expressed with multiple genes involved in critical cellular processes such as cytoskeletal organization, cell adhesion, and the Janus kinase/signal transducer and activator of transcription (JAK/STAT) signaling pathway. These functional associations suggest that CDRT7 not only serves as an independent prognostic marker but may also play a role in modulating glioma progression and cellular dynamics. Thus, the inclusion of CDRT7 in risk stratification models highlights its potential utility as both a biomarker for accurate outcome prediction and a candidate for further functional investigation in glioma biology.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael F Press, Jose A Seoane, Christina Curtis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Assessment of ERBB2/HER2 Status in HER2-Equivocal Breast Cancers by FISH and 2013/2014 ASCO-CAP Guidelines."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JAMA Oncol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1001/jamaoncol.2018.6012"}], "href": "https://doi.org/10.1001/jamaoncol.2018.6012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30520947"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30520947"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chandni V Pal, Tanya N Eble, Rachel D Burnside, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Variable levels of tissue mosaicism can confound the interpretation of chromosomal microarray results from peripheral blood."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Med Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejmg.2014.03.001"}], "href": "https://doi.org/10.1016/j.ejmg.2014.03.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24636861"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24636861"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Chenggong Hu, Yongfang Zhou, Chang Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Risk assessment model constructed by differentially expressed lncRNAs for the prognosis of glioma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2018.6639"}], "href": "https://doi.org/10.3892/or.2018.6639"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30106138"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30106138"}]}]}]}
|
| Synonyms | LINC00025, NCRNA00025 |
| NCBI Gene ID | 94150 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CDRT7 has 251 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.
Click the + buttons to view associations for CDRT7 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of CDRT7 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of CDRT7 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of CDRT7 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of CDRT7 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at CDRT7 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of CDRT7 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of CDRT7 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of CDRT7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of CDRT7 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of CDRT7 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of CDRT7 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at CDRT7 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |