CECR3 Gene

Name cat eye syndrome chromosome region, candidate 3 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CECR3 is a putative gene localized within the cat eye syndrome critical region on human chromosome 22q11. Comparative genomic analysis between human and mouse sequences led to its identification, together with another candidate (CECR9), by pinpointing solitary amplified exons that were not detected via expressed sequence tag (EST) matches."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although its precise biological function remains to be elucidated, its location within a dosage‐sensitive region implicated in cat eye syndrome suggests that imbalances in its copy number—as observed in cases with structural rearrangements like the rare ring small supernumerary marker chromosome—might contribute to the diverse clinical manifestations of the syndrome."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " While other studies have explored genetic variations in diverse contexts—such as metastasis timing in colorectal cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "and the regulation of endometrial receptivity by long noncoding RNAs"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "—none of these investigations directly address CECR3’s function. Thus, further research is required to define its role and assess whether aberrations in CECR3 dosage contribute to the pathogenesis of cat eye syndrome.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "T K Footz, P Brinkman-Mills, G S Banting, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Res (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gr.154901"}], "href": "https://doi.org/10.1101/gr.154901"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11381032"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11381032"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Irén Haltrich, Henriett Pikó, Eszter Kiss, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A de novo atypical ring sSMC(22) characterized by array CGH in a boy with cat-eye syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cytogenet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1755-8166-7-37"}], "href": "https://doi.org/10.1186/1755-8166-7-37"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24959203"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24959203"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Michelle E Penney, Patrick S Parfrey, Sevtap Savas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-019-5346-5"}], "href": "https://doi.org/10.1186/s12885-019-5346-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30738427"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30738427"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chun Feng, Jin-Ming Shen, Ping-Ping Lv, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction of implantation failure related lncRNA-mRNA network and identification of lncRNA biomarkers for predicting endometrial receptivity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biol Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/ijbs.25081"}], "href": "https://doi.org/10.7150/ijbs.25081"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30123082"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30123082"}]}]}]}
NCBI Gene ID 27442
API
Download Associations
Predicted Functions View CECR3's ARCHS4 Predicted Functions.
Co-expressed Genes View CECR3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CECR3's ARCHS4 Predicted Functions.

Functional Associations

CECR3 has 659 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for CECR3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CECR3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of CECR3 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CECR3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CECR3 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CECR3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CECR3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing CECR3 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of CECR3 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of CECR3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CECR3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of CECR3 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of CECR3 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CECR3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with CECR3 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with CECR3 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CECR3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of CECR3 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of CECR3 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CECR3 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.