CFAP298-TCP10L Gene

Name CFAP298-TCP10L readthrough
Description This locus represents naturally occurring readthrough transcription between the neighboring chromosome 21 open reading frame 59 (C21orf59) and TCP10L (t-complex 10 like) genes on chromosome 21. Readthrough transcripts may encode a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Apr 2017]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CFAP298‐TCP10L appears to represent a chimeric transcript generated through alternative splicing or fusion events that can impact gene essentiality in cancer. In one study, a large‐scale platform (TranscriptAchilles) was used to integrate loss‐of‐function screens and transcriptome profiling to identify transcript isoforms that serve as biomarkers for gene essentiality. Although CFAP298‐TCP10L was not explicitly discussed as a canonical oncogene, its inclusion in such analyses suggests that its aberrant splicing could influence tumor cell dependencies and thereby provide a starting point for therapeutic target discovery."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a complementary study, genome‐wide profiling of chimeric RNAs in non‐diseased human tissues demonstrated that transcripts like CFAP298‐TCP10L occur not only in cancer but also in normal cells, underscoring the need to distinguish between disease‐specific aberrations and naturally occurring fusion events when considering functional relevance and biomarker potential."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings suggest that CFAP298‐TCP10L may play a dual role—acting as a functional marker within the deregulated splicing landscapes of cancer and as part of the broader repertoire of chimeric RNAs present under physiological conditions—highlighting its promise for further investigation in both precision medicine and the study of gene regulation.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Fernando Carazo, Lucía Campuzano, Xabier Cendoya, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TranscriptAchilles: a genome-wide platform to predict isoform biomarkers of gene essentiality in cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gigascience (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/gigascience/giz021"}], "href": "https://doi.org/10.1093/gigascience/giz021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30942869"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30942869"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sandeep Singh, Fujun Qin, Shailesh Kumar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The landscape of chimeric RNAs in non-diseased tissues and cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkz1223"}], "href": "https://doi.org/10.1093/nar/gkz1223"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31965184"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31965184"}]}]}]}
NCBI Gene ID 110091775
API
Download Associations
Predicted Functions View CFAP298-TCP10L's ARCHS4 Predicted Functions.
Co-expressed Genes View CFAP298-TCP10L's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CFAP298-TCP10L's ARCHS4 Predicted Functions.

Functional Associations

CFAP298-TCP10L has 172 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for CFAP298-TCP10L from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with CFAP298-TCP10L gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CFAP298-TCP10L gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of CFAP298-TCP10L gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CFAP298-TCP10L gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CFAP298-TCP10L gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CFAP298-TCP10L gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with CFAP298-TCP10L protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.