CHL1-AS2 Gene

Name CHL1 antisense RNA 2
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CHL1‐AS2 is a long non‐coding RNA that has been shown to be co‐expressed with the CHL1 gene in ovarian endometriosis, where both molecules are significantly upregulated in ectopic endometrial tissues compared with eutopic and normal tissues."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In this context, the marked positive correlation between CHL1‐AS2 and CHL1 suggests that CHL1‐AS2 may be part of a regulatory network that influences cellular adhesion and tissue remodeling processes involved in the development of ovarian endometriosis.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n While the specific functional details of CHL1‐AS2 have been principally investigated in ovarian endometriosis (1), research on long non‑coding RNAs in general has revealed their broader roles as competing endogenous RNAs (ceRNAs). Studies in rectal adenocarcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", breast cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", and colorectal cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "have highlighted that lncRNAs can function as key regulators of gene expression by sequestering microRNAs and modulating downstream messenger RNAs. In addition, the emerging exploration of lncRNAs in the context of endometriosis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "supports the concept that CHL1‐AS2 could also participate in similar ceRNA networks, thereby influencing pathogenic processes such as cellular proliferation, migration, and adhesion.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore the potential importance of CHL1‐AS2 in the development of ovarian endometriosis, possibly through the modulation of CHL1 activity and integration into broader lncRNA‐mediated ceRNA regulatory frameworks.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chen Zhang, Wei Wu, Xue Ye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Aberrant expression of CHL1 gene and long non-coding RNA CHL1-AS1, CHL1-AS2 in ovarian endometriosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Obstet Gynecol Reprod Biol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejogrb.2019.03.020"}], "href": "https://doi.org/10.1016/j.ejogrb.2019.03.020"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30943448"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30943448"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhiyuan Zhang, Sen Wang, Dongjian Ji, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction of a ceRNA network reveals potential lncRNA biomarkers in rectal adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2018.6296"}], "href": "https://doi.org/10.3892/or.2018.6296"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29512732"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29512732"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Chun-Ni Fan, Lei Ma, Ning Liu "}, {"type": "b", "children": [{"type": "t", "text": "Systematic analysis of lncRNA-miRNA-mRNA competing endogenous RNA network identifies four-lncRNA signature as a prognostic biomarker for breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-018-1640-2"}], "href": "https://doi.org/10.1186/s12967-018-1640-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30261893"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30261893"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Cun Liao, Xue Huang, Yizhen Gong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Discovery of core genes in colorectal cancer by weighted gene co-expression network analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.10605"}], "href": "https://doi.org/10.3892/ol.2019.10605"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31402962"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31402962"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Wenying Yan, Hongmei Hu, Biao Tang "}, {"type": "b", "children": [{"type": "t", "text": "Progress in understanding the relationship between long noncoding RNA and endometriosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Obstet Gynecol Reprod Biol X (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.eurox.2019.100067"}], "href": "https://doi.org/10.1016/j.eurox.2019.100067"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32021971"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32021971"}]}]}]}
NCBI Gene ID 642891
API
Download Associations
Predicted Functions View CHL1-AS2's ARCHS4 Predicted Functions.
Co-expressed Genes View CHL1-AS2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CHL1-AS2's ARCHS4 Predicted Functions.

Functional Associations

CHL1-AS2 has 340 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for CHL1-AS2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of CHL1-AS2 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of CHL1-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of CHL1-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CHL1-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CHL1-AS2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CHL1-AS2 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of CHL1-AS2 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CHL1-AS2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.