CHODL-AS1 Gene

Name CHODL antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Two independent studies have underscored the importance of long non‐coding RNAs (lncRNAs) in disease‐relevant regulatory networks. In one study of cutaneous squamous cell carcinoma (cSCC), RNA‐sequencing revealed that many lncRNAs—including a set of skin‐specific transcripts—were significantly dysregulated (1). Although CHODL‑AS1 was not explicitly mentioned by name in the report, its categorization within skin‐enriched lncRNAs suggests that, by analogy with other candidates identified, it may play a role in the regulation of key pathways such as cell cycle control, apoptosis, inflammation, and epidermal differentiation in the skin.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a separate investigation addressing male infertility, genome‐wide association analysis identified several lncRNAs that interact with microRNAs to influence genes involved in spermatogenesis and fertilization (2). Even though CHODL‑AS1 was not among the lncRNAs directly associated with male infertility in that study, this work reinforces the concept that tissue‐specific lncRNAs can modulate gene expression via interactions with miRNAs and other regulatory factors. Thus, by its membership in the broader family of tissue‐enriched lncRNAs, CHODL‑AS1 may similarly contribute to the fine‐tuning of gene regulatory networks in specific cellular contexts.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings highlight a potential functional role for CHODL‑AS1 in modulating diverse biological processes through both transcription factor networks and miRNA interactions. Further studies will be necessary to delineate the exact mechanisms by which CHODL‑AS1 influences skin biology and other tissue‐specific processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kunal Das Mahapatra, Lorenzo Pasquali, Jonas Nørskov Søndergaard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A comprehensive analysis of coding and non-coding transcriptomic changes in cutaneous squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-020-59660-6"}], "href": "https://doi.org/10.1038/s41598-020-59660-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32108138"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32108138"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Maria-Anna Kyrgiafini, Maria Markantoni, Theologia Sarafidou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study identifies candidate markers related to lincRNAs associated with male infertility in the Greek population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Assist Reprod Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10815-020-01937-w"}], "href": "https://doi.org/10.1007/s10815-020-01937-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32880781"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32880781"}]}]}]}
Synonyms C21ORF39, NCRNA00157
NCBI Gene ID 54075
API
Download Associations
Predicted Functions View CHODL-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View CHODL-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CHODL-AS1's ARCHS4 Predicted Functions.

Functional Associations

CHODL-AS1 has 336 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for CHODL-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CHODL-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CHODL-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of CHODL-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CHODL-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CHODL-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CHODL-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CHODL-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of CHODL-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CHODL-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with CHODL-AS1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with CHODL-AS1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of CHODL-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CHODL-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of CHODL-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CHODL-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of CHODL-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.