CIROP Gene

Name ciliated left-right organizer metallopeptidase
Description Predicted to enable peptidase activity. Predicted to be involved in establishment of left/right asymmetry. Predicted to be located in membrane. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSeveral studies have highlighted the diverse roles played by proteins involved in reproductive and developmental processes. For example, investigations into Tudor‐domain–containing proteins, such as STK31/TDRD8, have revealed their critical roles in the assembly of nuage-associated granules and in regulating spermatogenesis in mice, illustrating complex mechanisms in germ cell development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast, CIROP—a putative extracellular metallopeptide protease—is expressed exclusively in ciliated left–right organizers (LROs) during vertebrate embryogenesis. Functional studies in zebrafish and Xenopus have demonstrated that CIROP operates solely on the left side: it acts downstream of the leftward flow generated by motile cilia yet upstream of the asymmetric expression of DAND5. This precise positioning within the developmental cascade is critical for establishing left–right asymmetry."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, human genetic data indicate that loss-of-function mutations in CIROP result in recessive situs anomalies, reinforcing its essential role in left–right patterning. Collectively, these findings suggest that CIROP is an integral component of an ancestral genetic module that, despite being lost in certain vertebrate lineages, remains indispensable for proper left–right axis determination in humans."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jianqiang Bao, Li Wang, Jianbo Lei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "STK31(TDRD8) is dynamically regulated throughout mouse spermatogenesis and interacts with MIWI protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Histochem Cell Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00418-011-0897-9"}], "href": "https://doi.org/10.1007/s00418-011-0897-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22205278"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22205278"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jian Zhou, N Adrian Leu, Sigrid Eckardt, et al. "}, {"type": "b", "children": [{"type": "t", "text": "STK31/TDRD8, a germ cell-specific factor, is dispensable for reproduction in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0089471"}], "href": "https://doi.org/10.1371/journal.pone.0089471"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24586802"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24586802"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Emmanuelle Szenker-Ravi, Tim Ott, Muznah Khatoo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Discovery of a genetic module essential for assigning left-right asymmetry in humans and ancestral vertebrates."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41588-021-00970-4"}], "href": "https://doi.org/10.1038/s41588-021-00970-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34903892"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34903892"}]}]}]}
NCBI Gene ID 100128908
API
Download Associations
Predicted Functions View CIROP's ARCHS4 Predicted Functions.
Co-expressed Genes View CIROP's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CIROP's ARCHS4 Predicted Functions.

Functional Associations

CIROP has 438 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, chemical, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for CIROP from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CIROP gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
GO Biological Process Annotations 2025 biological processes involving CIROP gene from the curated GO Biological Process Annotations2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CIROP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of CIROP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CIROP gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CIROP gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CIROP gene from the RummaGEO Gene Perturbation Signatures dataset.