| Name | CNOT10 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe regulation of RNA stability, a crucial component in gene expression control, is orchestrated in part by the CCR4‐NOT deadenylase complex. Within this complex, the CNOT10 subunit plays a significant role in modulating mRNA decay, as evidenced by the observation that depletion of CNOT10 in mouse embryonic stem cells leads to an upregulation of specific transcripts, including those expressed in 2‐cell and neuronal stages. This finding suggests that the CCR4‐NOT complex, via its CNOT10 component, functions in the fine‐tuning of mRNA turnover, ensuring proper levels of gene expression during critical developmental transitions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nIn parallel, the study identified that RING finger protein 219 (RNF219) associates with the CCR4‐NOT complex and endows it with active deadenylation activity in vitro. Notably, knockdown of RNF219 results in the downregulation of 2‐cell‐specific and neuronal genes, underscoring a role for this interactor in maintaining precise RNA decay rates essential for proper gene expression. The contrasting regulation observed upon depletion of RNF219 compared to that of CNOT10 highlights a tightly coordinated mechanism in which different components of the complex have opposing effects on mRNA stability."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n\nFurthermore, although not explicitly detailed in the study, the designation “CNOT10‐AS1” implies the existence of a natural antisense long noncoding RNA associated with the CNOT10 gene. By analogy with other antisense transcripts, CNOT10‐AS1 is likely to play a regulatory role, modulating the expression or function of CNOT10 and thereby indirectly impacting the deadenylation activity of the CCR4‐NOT complex. Such a regulatory mechanism would contribute to the maintenance of RNA homeostasis, ultimately influencing embryonic stem cell pluripotency and neuronal lineage commitment."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hao Du, Chen Chen, Yan Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RNF219 interacts with CCR4-NOT in regulating stem cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Cell Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jmcb/mjaa061"}], "href": "https://doi.org/10.1093/jmcb/mjaa061"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33104214"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33104214"}]}]}]}
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| NCBI Gene ID | 100874109 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CNOT10-AS1 has 454 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 2 datasets.
Click the + buttons to view associations for CNOT10-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of CNOT10-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CNOT10-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |