COPG2IT1 Gene

Name COPG2 imprinted transcript 1 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have identified a long non‐coding RNA, commonly referred to as COPG2IT1 (also known as the antisense transcript CIT1), which is located within an intronic region of the COPG2 gene. In mouse, an untranslated transcript named Mit1/Lb9 resides within intron 20 of Copg2 and is maternally imprinted, whereas in humans the COPG2IT1 transcript shows paternal‐specific expression in fetal tissues even though the adjacent, protein‐coding COPG2 is expressed biallelically."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Along with MEST and MESTIT1, COPG2IT1 forms part of an imprinted gene cluster at human chromosome 7q32"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", suggesting that these transcripts collectively contribute to the allele‐specific regulation of gene expression within this region. Further analysis has shown that while neighboring genes like TSGA14 display biallelic expression, the imprinting of COPG2IT1 appears to be a unique, conserved feature that may serve a cis‐regulatory role, potentially through mechanisms such as transcriptional interference or modulation of chromatin structure."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Collectively, these findings indicate that COPG2IT1 is not merely a by‐product of transcription but rather a functional non‐coding RNA that may influence the local epigenetic landscape and transcriptional output of imprinted genes during development.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Y J Lee, C W Park, Y Hahn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mit1/Lb9 and Copg2, new members of mouse imprinted genes closely linked to Peg1/Mest(1)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2000)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0014-5793(00)01461-7"}], "href": "https://doi.org/10.1016/s0014-5793(00"}, {"type": "t", "text": "01461-7) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "10788617"}], "href": "https://pubmed.ncbi.nlm.nih.gov/10788617"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Kazuhiko Nakabayashi, Louise Bentley, Megan P Hitchins, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and characterization of an imprinted antisense RNA (MESTIT1) in the human MEST locus on chromosome 7q32."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/11.15.1743"}], "href": "https://doi.org/10.1093/hmg/11.15.1743"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12095916"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12095916"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Takahiro Yamada, Tomohiko Kayashima, Kentaro Yamasaki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The gene TSGA14, adjacent to the imprinted gene MEST, escapes genomic imprinting."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0378-1119(02)00428-6"}], "href": "https://doi.org/10.1016/s0378-1119(02"}, {"type": "t", "text": "00428-6) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12034494"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12034494"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "K Yamasaki, S Hayashida, K Miura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The novel gene, gamma2-COP (COPG2), in the 7q32 imprinted domain escapes genomic imprinting."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2000)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1006/geno.2000.6265"}], "href": "https://doi.org/10.1006/geno.2000.6265"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "10995575"}], "href": "https://pubmed.ncbi.nlm.nih.gov/10995575"}]}]}]}
Synonyms DKFZP761N09121, NCRNA00170, CIT1, COPG2AS
NCBI Gene ID 53844
API
Download Associations
Predicted Functions View COPG2IT1's ARCHS4 Predicted Functions.
Co-expressed Genes View COPG2IT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View COPG2IT1's ARCHS4 Predicted Functions.

Functional Associations

COPG2IT1 has 224 functional associations with biological entities spanning 6 categories (organism, chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for COPG2IT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of COPG2IT1 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of COPG2IT1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CMAP Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of COPG2IT1 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of COPG2IT1 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with COPG2IT1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of COPG2IT1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of COPG2IT1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of COPG2IT1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of COPG2IT1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of COPG2IT1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
Hub Proteins Protein-Protein Interactions interacting hub proteins for COPG2IT1 from the curated Hub Proteins Protein-Protein Interactions dataset.
LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of COPG2IT1 gene from the LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.