COPS9 Gene

Name COP9 signalosome subunit 9
Description Involved in several processes, including cellular response to UV; cytoplasmic sequestering of protein; and negative regulation of protein neddylation. Located in chromatin; cytoplasm; and nucleus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The COP9 signalosome (often abbreviated as CSN) is a highly conserved, multi‐subunit protein complex that plays a central role in regulating protein homeostasis by modulating the activity of cullin–RING ubiquitin ligases (CRLs). By removing the ubiquitin‐like modifier NEDD8 from cullins, the complex controls the stability and turnover of a wide range of proteins involved in cell cycle progression, DNA damage repair, and stress responses. Under conditions of cellular stress and oncogenic signaling, for example, interactions between regulatory proteins such as Myeov2 and the COP9 signalosome help govern the subnuclear localization and neddylation status of key molecules, thereby influencing downstream pathways including p53‐mediated stress responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its role in controlling post‐translational modifications, the COP9 signalosome is integral to the maintenance of genomic integrity, as it fine‐tunes CRL activity during the DNA damage response, ensuring that proteins implicated in repair processes are appropriately regulated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Comparative studies spanning diverse eukaryotic organisms have highlighted that certain subunits of the complex, notably CSN2 and CSN5, are evolutionarily highly constrained, underlining their importance in preserving cellular function across species."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, recent advances have expanded our understanding of this complex through the identification of an additional integral component, CSNAP, which binds to multiple CSN subunits and contributes to the overall structural and functional integrity of the signalosome. This discovery further emphasizes the complexity and versatility of the COP9 signalosome in regulating cell proliferation and morphology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings demonstrate that the COP9 signalosome functions as a master regulator of cellular processes through its role in post‐translational modification, protein turnover, and the cellular response to stress, making it a key player in maintaining cellular homeostasis.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Manato Ebina, Fuminori Tsuruta, Megumi C Katoh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Myeloma overexpressed 2 (Myeov2) regulates L11 subnuclear localization through Nedd8 modification."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0065285"}], "href": "https://doi.org/10.1371/journal.pone.0065285"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23776465"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23776465"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Dudley Chung, Graham Dellaire "}, {"type": "b", "children": [{"type": "t", "text": "The Role of the COP9 Signalosome and Neddylation in DNA Damage Signaling and Repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomolecules (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/biom5042388"}], "href": "https://doi.org/10.3390/biom5042388"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26437438"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26437438"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Emanuel Barth, Ron Hübler, Aria Baniahmad, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Evolution of COP9 Signalosome in Unicellular and Multicellular Organisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Biol Evol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/gbe/evw073"}], "href": "https://doi.org/10.1093/gbe/evw073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27044515"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27044515"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shelly Rozen, Maria G Füzesi-Levi, Gili Ben-Nissan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CSNAP Is a Stoichiometric Subunit of the COP9 Signalosome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2015.09.021"}], "href": "https://doi.org/10.1016/j.celrep.2015.09.021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26456823"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26456823"}]}]}]}
NCBI Gene ID 150678
API
Download Associations
Predicted Functions View COPS9's ARCHS4 Predicted Functions.
Co-expressed Genes View COPS9's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View COPS9's ARCHS4 Predicted Functions.

Functional Associations

COPS9 has 1,315 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 30 datasets.

Click the + buttons to view associations for COPS9 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of COPS9 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with COPS9 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of COPS9 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of COPS9 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
CM4AI U2OS Cell Map Protein Localization Assemblies assemblies containing COPS9 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing COPS9 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with COPS9 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by COPS9 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with COPS9 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving COPS9 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving COPS9 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing COPS9 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing COPS9 protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of COPS9 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of COPS9 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of COPS9 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of COPS9 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of COPS9 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of COPS9 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of COPS9 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of COPS9 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of COPS9 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of COPS9 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of COPS9 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of COPS9 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of COPS9 gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of COPS9 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of COPS9 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with COPS9 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving COPS9 protein from the WikiPathways Pathways 2024 dataset.