CPLANE1 Gene

Name ciliogenesis and planar polarity effector complex subunit 1
Description The protein encoded by this gene has putative coiled-coil domains and may be a transmembrane protein. Defects in this gene are a cause of Joubert syndrome (JBTS). [provided by RefSeq, May 2012]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CPLANE1—previously known as C5orf42 and also referred to as JBTS17—is emerging as a multifunctional protein that plays key roles in ciliogenesis and neural development. Several recent studies demonstrate that CPLANE1 localizes to the ciliary transition zone where it is critical for the proper formation and function of primary cilia, acting upstream of other transition zone proteins such as NPHP1 and CEP290."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In both human patients and animal models, mutations in CPLANE1 underlie a spectrum of ciliopathies—including Joubert syndrome and oral‐facial‐digital syndrome type VI—characterized by distinctive neuroimaging features, mid‐hindbrain malformations, and variable extracerebral defects. Notably, the lack of a simple genotype–phenotype correlation argues that additional genetic modifiers contribute to the overall expressivity of CPLANE1‐related disorders."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, beyond its established role in ciliogenesis, recent evidence indicates that CPLANE1 may also have extraciliary functions. Investigations using RNA interference and in vivo electroporation strategies in developing mouse cortex reveal that CPLANE1 localizes to the kinetochore and is involved in the regulation of mitotic progression. Deficiency of CPLANE1 disrupts proper chromosome alignment and spindle orientation by affecting the localization of key mitotic regulators such as LIS1, providing a putative mechanistic link between abnormal ciliary function and cortical malformation phenotypes like microcephaly."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings indicate that CPLANE1 is indispensable for the establishment and maintenance of the primary cilium—a sensory and signaling hub—and is also necessary for ensuring accurate mitosis during neurogenesis. The pleiotropic consequences of CPLANE1 mutations highlight its dual role in ciliary structure/function and cell division, which together contribute to the broad clinical spectrum observed in ciliopathy patients.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rama Rao Damerla, Cheng Cui, George C Gabriel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel Jbts17 mutant mouse model of Joubert syndrome with cilia transition zone defects and cerebellar and other ciliopathy related anomalies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddv137"}], "href": "https://doi.org/10.1093/hmg/ddv137"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25877302"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25877302"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Carine Bonnard, Mohammad Shboul, Seyed Hassan Tonekaboni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel mutations in the ciliopathy-associated gene CPLANE1 (C5orf42) cause OFD syndrome type VI rather than Joubert syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Med Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejmg.2018.03.012"}], "href": "https://doi.org/10.1016/j.ejmg.2018.03.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29605658"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29605658"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qiuyan Liu, Haiqiao Wang, Jianhui Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Four novel compound heterozygous mutations in C5orf42 gene in patients with pure and mild Joubert syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Dev Neurosci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jdn.10029"}], "href": "https://doi.org/10.1002/jdn.10029"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32233090"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32233090"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hyowon Hong, Kwangsic Joo, Sang Min Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Extraciliary roles of the ciliopathy protein JBTS17 in mitosis and neurogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Neurol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ana.25491"}], "href": "https://doi.org/10.1002/ana.25491"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31004438"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31004438"}]}]}]}
NCBI Gene ID 65250
API
Download Associations
Predicted Functions View CPLANE1's ARCHS4 Predicted Functions.
Co-expressed Genes View CPLANE1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CPLANE1's ARCHS4 Predicted Functions.

Functional Associations

CPLANE1 has 2,452 functional associations with biological entities spanning 5 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 35 datasets.

Click the + buttons to view associations for CPLANE1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CPLANE1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of CPLANE1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CellMarker Gene-Cell Type Associations cell types associated with CPLANE1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of CPLANE1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
ClinVar Gene-Phenotype Associations 2025 phenotypes associated with CPLANE1 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CPLANE1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing CPLANE1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with CPLANE1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of CPLANE1 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by CPLANE1 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving CPLANE1 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with CPLANE1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with CPLANE1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving CPLANE1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving CPLANE1 gene from the curated GO Biological Process Annotations2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of CPLANE1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of CPLANE1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with CPLANE1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by CPLANE1 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CPLANE1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of CPLANE1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Kinase Library Tyrosine Kinome Atlas kinases that phosphorylate CPLANE1 protein from the Kinase Library Tyrosine Kinome Atlas dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of CPLANE1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by CPLANE1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of CPLANE1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of CPLANE1 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of CPLANE1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CPLANE1 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CPLANE1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CPLANE1 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of CPLANE1 gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of CPLANE1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CPLANE1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with CPLANE1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving CPLANE1 protein from the WikiPathways Pathways 2024 dataset.