CPLANE2 Gene

Name ciliogenesis and planar polarity effector complex subunit 2
Description Predicted to enable GTP binding activity. Predicted to be involved in cilium assembly; protein localization; and regulation of vesicle-mediated transport. Predicted to act upstream of or within several processes, including axoneme assembly; endocardial cushion fusion; and regulation of smoothened signaling pathway. Located in centriole; ciliary basal body; and ciliary transition zone. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The CPLANE complex (ciliogenesis and planar polarity effector) plays a critical role in the assembly and maintenance of primary cilia by integrating planar cell polarity cues with vesicular trafficking and intraflagellar transport. Composed of proteins such as Inturned, Fuzzy, WDPCP, JBTS17, and the small GTPase Rsg1, the complex orchestrates multiple steps in ciliogenesis. Detailed structural studies show that the CPLANE complex adopts a crescent‐shaped architecture that mediates binding to phospholipids and harbors homologous longin domains—features that implicate the complex in acting as a Rab guanine nucleotide exchange factor to activate Rab GTPases involved in vesicular trafficking. Functionally, CPLANE facilitates the recruitment and proper localization of intraflagellar transport components at the basal body, thereby ensuring efficient ciliary vesicle docking, axoneme elongation, and overall cilia function. Disruption of CPLANE components leads to defective intraflagellar transport dynamics, mislocalized basal bodies, and ultimately to ciliopathies that manifest with developmental anomalies and impaired cell signaling."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Gerasimos Langousis, Simone Cavadini, Niels Boegholm, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure of the ciliogenesis-associated CPLANE complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Adv (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciadv.abn0832"}], "href": "https://doi.org/10.1126/sciadv.abn0832"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35427153"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35427153"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Luis Sanchez-Pulido, Chris P Ponting "}, {"type": "b", "children": [{"type": "t", "text": "Hexa-Longin domain scaffolds for inter-Rab signalling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioinformatics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/bioinformatics/btz739"}], "href": "https://doi.org/10.1093/bioinformatics/btz739"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31562761"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31562761"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Michinori Toriyama, Chanjae Lee, S Paige Taylor, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.3558"}], "href": "https://doi.org/10.1038/ng.3558"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27158779"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27158779"}]}]}]}
NCBI Gene ID 79363
API
Download Associations
Predicted Functions View CPLANE2's ARCHS4 Predicted Functions.
Co-expressed Genes View CPLANE2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CPLANE2's ARCHS4 Predicted Functions.

Functional Associations

CPLANE2 has 1,867 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 23 datasets.

Click the + buttons to view associations for CPLANE2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CPLANE2 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of CPLANE2 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CPLANE2 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing CPLANE2 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing CPLANE2 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with CPLANE2 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with CPLANE2 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with CPLANE2 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving CPLANE2 gene from the curated GO Biological Process Annotations2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by CPLANE2 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of CPLANE2 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of CPLANE2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with CPLANE2 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CPLANE2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of CPLANE2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of CPLANE2 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of CPLANE2 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CPLANE2 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CPLANE2 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CPLANE2 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CPLANE2 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with CPLANE2 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving CPLANE2 protein from the WikiPathways Pathways 2024 dataset.