CPS1-IT1 Gene

Name CPS1 intronic transcript 1
Description This gene does not encode a protein, and it is located within an intron of the gene encoding carbamoyl-phosphate synthetase 1. [provided by RefSeq, Jul 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n This abstract summarizes the multifaceted roles of the long non‐coding RNA CPS1 intronic transcript 1 (CPS1‑IT1) in cancer and related disease processes. In several solid tumors – including colorectal cancer (CRC), hepatocellular carcinoma (HCC), melanoma, glioma, epithelial ovarian cancer (EOC), and lung cancer – CPS1‑IT1 is generally downregulated, and low expression levels are associated with enhanced cell proliferation, migration, invasion, epithelial–mesenchymal transition (EMT), and overall poor clinical outcomes. For example, in CRC, CPS1‑IT1 suppresses EMT and autophagy by inhibiting the activation of hypoxia‑inducible factor‑1α (HIF‑1α), thereby reducing tumor metastasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In HCC and melanoma, CPS1‑IT1 acts as a tumor suppressor by attenuating HIF‑1α signaling – either directly or indirectly via modulation of factors such as Hsp90 or by upregulating transcription factors like FOXA2 – resulting in decreased EMT progression and metastatic potential."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": " In glioma, enforced expression of CPS1‑IT1 reduces cell proliferation, migration, and invasion, supporting its role as an inhibitor of tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Similarly, in lung cancer and EOC, restoration of CPS1‑IT1 expression suppresses tumor cell growth and invasion while promoting apoptotic pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In contrast, studies in intrahepatic cholangiocarcinoma (ICC) have revealed that CPS1‑IT1, together with its partner gene CPS1, is upregulated; in this context, its elevated expression correlates with enhanced cell proliferation, poorer liver function, and reduced survival"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ", indicating that CPS1‑IT1 may exert context‐dependent functions.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, beyond its role in cancer, CPS1‑IT1 has been implicated in non‑malignant pathological processes. In a rat model of pulmonary arterial hypertension, for instance, overexpression of CPS1‑IT1 alleviated disease features by reducing IL‑1β expression via inhibition of HIF‑1 transcriptional activity and interference with the NF‑κB signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings indicate that CPS1‑IT1 predominantly functions as a tumor suppressor – largely by mitigating HIF‑1α activation and EMT – in a variety of cancers, although its role may vary in a tissue‐specific manner. The modulation of CPS1‑IT1 expression thus holds promise not only as a prognostic biomarker but also as a potential therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wei Zhang, Weitang Yuan, Junmin Song, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA CPS1-IT1 suppresses the metastasis of hepatocellular carcinoma by regulating HIF-1α activity and inhibiting epithelial-mesenchymal transition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.9635"}], "href": "https://doi.org/10.18632/oncotarget.9635"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27248828"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27248828"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tong-Hong Wang, Chi-Hao Wu, Chau-Ting Yeh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Melatonin suppresses hepatocellular carcinoma progression via lncRNA-CPS1-IT-mediated HIF-1α inactivation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.19316"}], "href": "https://doi.org/10.18632/oncotarget.19316"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29137263"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29137263"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xiaobo Zhou, Yamin Rao, Qilin Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA CPS1-IT1 suppresses melanoma cell metastasis through inhibiting Cyr61 via competitively binding to BRG1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28764"}], "href": "https://doi.org/10.1002/jcp.28764"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31111478"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31111478"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Hengsan Chen, Qiang Li, Jin Liang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA CPS1-IT1 is a positive prognostic factor and inhibits epithelial ovarian cancer tumorigenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2017)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28770969"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28770969"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Sen-Lin Ma, Ai-Jun Li, Zhao-Yang Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2015.4435"}], "href": "https://doi.org/10.3892/mmr.2015.4435"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26499888"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26499888"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Jian Shi, Xiaohua Li, Fan Zhang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Overexpressed long noncoding RNA CPS1-IT alleviates pulmonary arterial hypertension in obstructive sleep apnea by reducing interleukin-1β expression via HIF1 transcriptional activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28571"}], "href": "https://doi.org/10.1002/jcp.28571"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30982984"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30982984"}]}]}]}
Synonyms CPS1IT1, PRO0132, CPS1-IT, CPS1IT
NCBI Gene ID 29034
API
Download Associations
Predicted Functions View CPS1-IT1's ARCHS4 Predicted Functions.
Co-expressed Genes View CPS1-IT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CPS1-IT1's ARCHS4 Predicted Functions.

Functional Associations

CPS1-IT1 has 663 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for CPS1-IT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CPS1-IT1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of CPS1-IT1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of CPS1-IT1 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of CPS1-IT1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CPS1-IT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of CPS1-IT1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CPS1-IT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CPS1-IT1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CPS1-IT1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CPS1-IT1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of CPS1-IT1 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of CPS1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of CPS1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CPS1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of CPS1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of CPS1-IT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CPS1-IT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of CPS1-IT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CPS1-IT1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.