CRIPTO3 Gene

Name cripto, EGF-CFC family member 3
Description The TDGF3 locus has characteristics of a retrotransposon, including lack of introns and a poly(A) sequence. [provided by RefSeq, Jul 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nCRIPTO-3 is a processed pseudogene of CRIPTO-1 located on the X chromosome that is expressed in undifferentiated embryonal carcinoma cells. In these cells, CRIPTO-3 is regulated in parallel with CRIPTO-1, as both are subject to transcriptional repression by the orphan nuclear receptor GCNF during retinoic acid-induced differentiation. This regulatory mechanism suggests that CRIPTO-3, like CRIPTO-1, is part of an important stem cell “stemness” network that is normally down-regulated upon differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn cancer settings, CRIPTO-3 assumes oncogenic functions. Studies have demonstrated that CRIPTO-3 mRNA is the predominant CRIPTO message expressed in many tumor samples, and that the CRIPTO-3 protein, differing from CRIPTO-1 by only a few amino acids, actively participates in the Nodal-dependent signaling pathway. This functional equivalence in signaling supports its role in promoting tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, in colorectal cancer, the teratocarcinoma-derived growth factor 1 pseudogene 3 (TDGF1P3), essentially synonymous with CRIPTO-3, is markedly upregulated. This pseudogene promotes oncogenesis by binding to miR-338-3p, thereby preventing the miRNA from targeting pyruvate kinase M2 (PKM2). The resultant derepression of PKM2 contributes to enhanced proliferation, migration, and invasion of cancer cells, highlighting a novel mechanism by which CRIPTO-3/TDGF1P3 may drive tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Moritz Hentschke, Ingo Kurth, Uwe Borgmeyer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Germ cell nuclear factor is a repressor of CRIPTO-1 and CRIPTO-3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M606975200"}], "href": "https://doi.org/10.1074/jbc.M606975200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16954206"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16954206"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chao Sun, Olivia Orozco, Dian L Olson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CRIPTO3, a presumed pseudogene, is expressed in cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2008.09.113"}], "href": "https://doi.org/10.1016/j.bbrc.2008.09.113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18835250"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18835250"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qianwen Ni, Min An, Shi Luo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pseudogene TDGF1P3 regulates the proliferation and metastasis of colorectal cancer cells via the miR-338-3p-PKM2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2022.11.054"}], "href": "https://doi.org/10.1016/j.bbrc.2022.11.054"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36436343"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36436343"}]}]}]}
NCBI Gene ID 6998
API
Download Associations
Predicted Functions View CRIPTO3's ARCHS4 Predicted Functions.
Co-expressed Genes View CRIPTO3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CRIPTO3's ARCHS4 Predicted Functions.

Functional Associations

CRIPTO3 has 751 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 15 datasets.

Click the + buttons to view associations for CRIPTO3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CRIPTO3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of CRIPTO3 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CRIPTO3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
CM4AI U2OS Cell Map Protein Localization Assemblies assemblies containing CRIPTO3 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
GO Biological Process Annotations 2025 biological processes involving CRIPTO3 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing CRIPTO3 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by CRIPTO3 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of CRIPTO3 gene from the GTEx eQTL 2025 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with CRIPTO3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CRIPTO3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of CRIPTO3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Reactome Pathways 2024 pathways involving CRIPTO3 protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CRIPTO3 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CRIPTO3 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CRIPTO3 gene from the RummaGEO Gene Perturbation Signatures dataset.