| Name | CYFIP related Rac1 interactor B |
| Description | Enables small GTPase binding activity. Involved in several processes, including cellular response to molecule of bacterial origin; negative regulation of small GTPase mediated signal transduction; and regulation of organelle organization. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CYRI (also known as FAM49B) is emerging as a multifunctional regulator that modulates Rac1‐dependent actin cytoskeletal dynamics, thereby impacting immune activation, host–pathogen interactions, and cancer progression. For example, in T lymphocytes, CYRI binds the active form of Rac1 through a conserved domain and functions as a negative regulator; loss of CYRI/FAM49B leads to hyperactivation of T cells following T cell receptor stimulation because of enhanced Rac1 activity and subsequent cytoskeletal reorganization."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In pancreatic ductal adenocarcinoma, CYRI localizes to mitochondria where it regulates mitochondrial fission and limits reactive oxygen species generation—processes that suppress tumor cell proliferation and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the context of infectious diseases, CYRI plays a protective role; by binding Rac1, it dampens signaling that would otherwise promote actin-dependent processes such as macropinocytosis, phagocytosis, and cell migration. This attenuation of Rac1‐driven cytoskeletal changes is critical for restricting bacterial entry and dissemination in infections caused by pathogens such as Salmonella, Mycobacterium tuberculosis, and Listeria monocytogenes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Altered expression of CYRI is also evident in noninfectious disease settings. In endometriosis, for instance, downregulation of FAM49B in omental fat has been documented and linked with concomitant changes in proteinases and environmental chemical exposures."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Moreover, in hepatic ischemia/reperfusion injury, upregulation of microRNA-22 targets CYRI, leading to reduced CYRI levels and enhanced inflammatory signaling, an effect that underlines its role in modulating inflammatory responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Finally, in other cancer types such as hepatocellular carcinoma, elevated expression of FAM49B has been associated with poor prognosis and an immunosuppressive tumor microenvironment, highlighting that the role of CYRI/FAM49B can be context-dependent."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Overall, the collective findings indicate that CYRI/FAM49B functions primarily as a modulator of Rac1 signaling, acting to restrain excessive actin polymerization—thereby controlling T cell activation, limiting pathogen uptake, and influencing tumor cell behavior in a manner that depends on the cellular and disease context.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wanjing Shang, Yong Jiang, Michael Boettcher, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide CRISPR screen identifies FAM49B as a key regulator of actin dynamics and T cell activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1801340115"}], "href": "https://doi.org/10.1073/pnas.1801340115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29632189"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29632189"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "M S Chattaragada, C Riganti, M Sassoe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FAM49B, a novel regulator of mitochondrial function and integrity that suppresses tumor metastasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2017.358"}], "href": "https://doi.org/10.1038/onc.2017.358"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29059164"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29059164"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kyoko E Yuki, Hadir Marei, Evgenij Fiskin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CYRI/FAM49B negatively regulates RAC1-driven cytoskeletal remodelling and protects against bacterial infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Microbiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41564-019-0484-8"}], "href": "https://doi.org/10.1038/s41564-019-0484-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31285585"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31285585"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Katherine E Williams, Olga Miroshnychenko, Eric B Johansen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Urine, peritoneal fluid and omental fat proteomes of reproductive age women: Endometriosis-related changes and associations with endocrine disrupting chemicals."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Proteomics (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jprot.2014.09.015"}], "href": "https://doi.org/10.1016/j.jprot.2014.09.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25284053"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25284053"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zuotian Huang, Junliang Pu, Yunhai Luo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FAM49B, restrained by miR-22, relieved hepatic ischemia/reperfusion injury by inhibiting TRAF6/IKK signaling pathway in a Rac1-dependent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Immunol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molimm.2022.01.015"}], "href": "https://doi.org/10.1016/j.molimm.2022.01.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35131594"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35131594"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Feng Xu, Jionghuang Chen, Dihua Huang "}, {"type": "b", "children": [{"type": "t", "text": "Pan-cancer analysis identifies FAM49B as an immune-related prognostic maker for hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cancer (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/jca.65421"}], "href": "https://doi.org/10.7150/jca.65421"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34976189"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34976189"}]}]}]}
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| NCBI Gene ID | 51571 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CYRIB has 3,689 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 38 datasets.
Click the + buttons to view associations for CYRIB from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CYRIB gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of CYRIB gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with CYRIB protein from the CCLE Cell Line Proteomics dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with CYRIB gene from the CellMarker Gene-Cell Type Associations dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of CYRIB gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| CM4AI U2OS Cell Map Protein Localization Assemblies | assemblies containing CYRIB protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing CYRIB protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with CYRIB protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by CYRIB gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with CYRIB gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with CYRIB gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving CYRIB gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving CYRIB gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing CYRIB protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing CYRIB protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by CYRIB gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by CYRIB gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of CYRIB gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of CYRIB gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with CYRIB gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by CYRIB gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of CYRIB gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of CYRIB gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| KEGG Pathways 2026 | pathways involving CYRIB protein from the KEGG Pathways 2026 dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of CYRIB gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LINCS L1000 CMAP CRISPR Knockout Consensus Signatures | gene perturbations changing expression of CYRIB gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by CYRIB gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| Reactome Pathways 2024 | pathways involving CYRIB protein from the Reactome Pathways 2024 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of CYRIB gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of CYRIB gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of CYRIB gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of CYRIB gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of CYRIB gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of CYRIB gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of CYRIB gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of CYRIB protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of CYRIB protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with CYRIB protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |