| Name | D21S2088E |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent genome‐wide investigations into subclinical interstitial lung disease have highlighted a candidate locus—D21S2088E—that may contribute to disease pathogenesis. In a large multi‐ethnic study assessing lung densitometry using high attenuation areas (HAA) on CT scans, genomic analyses identified regions suggesting that alterations in protein glycosylation and deregulation of the cell cycle, mediated in part by long non‐coding RNA mechanisms, may be important in disease development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although the specific mechanistic details remain to be fully elucidated, D21S2088E appears to be functionally linked to these pathways. In this context, D21S2088E is hypothesized to influence the processes of protein glycosylation as well as the regulation of cell cycle checkpoints. Such roles suggest that dysregulation at this locus could lead to cell cycle disinhibition, thereby contributing to the lung tissue remodeling and interstitial changes observed in early ILD.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings position D21S2088E as a potential molecular player in ILD pathogenesis, warranting further investigation into its role in modulating key cellular processes that underlie the development and progression of this disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ani Manichaikul, Xin-Qun Wang, Li Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study of subclinical interstitial lung disease in MESA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Respir Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12931-017-0581-2"}], "href": "https://doi.org/10.1186/s12931-017-0581-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28521775"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28521775"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jian Zhang, Chang Zou, Chenzhi Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel Linc00308/D21S2088E Intergenic Region ALK Fusion and Its Enduring Clinical Responses to Crizotinib."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Thorac Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jtho.2020.03.009"}], "href": "https://doi.org/10.1016/j.jtho.2020.03.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32217130"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32217130"}]}]}]}
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| NCBI Gene ID | 266917 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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D21S2088E has 361 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.
Click the + buttons to view associations for D21S2088E from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of D21S2088E gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of D21S2088E gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of D21S2088E gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of D21S2088E gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at D21S2088E gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of D21S2088E gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of D21S2088E gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of D21S2088E gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of D21S2088E gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of D21S2088E gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with D21S2088E gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with D21S2088E gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of D21S2088E gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of D21S2088E gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at D21S2088E gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |