DBET Gene

HGNC Family Non-coding RNAs
Name D4Z4 binding element transcript (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Facioscapulohumeral muscular dystrophy (FSHD) is now understood to arise from epigenetic de‐repression of the 4q35 region following a contraction of the D4Z4 repeat array. Central to this pathogenic cascade is the expression of the chromatin‐associated long noncoding RNA DBE-T, which is selectively produced in affected individuals."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " DBE-T functions by recruiting the Trithorax group protein Ash1L to the FSHD locus, thereby promoting histone H3 lysine 36 dimethylation and subsequent chromatin remodeling that drives transcriptional activation of 4q35 genes. This mechanism links reduced repeat copy number with a loss of Polycomb silencing and the subsequent misexpression of genes implicated in FSHD pathogenesis. Further, analyses of complex deletion alleles (DPED) have revealed that DBE-T can be among the genetic elements lost, prompting a re-evaluation of its contribution to the disease phenotype."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Daphne S Cabianca, Valentina Casa, Beatrice Bodega, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2012.03.035"}], "href": "https://doi.org/10.1016/j.cell.2012.03.035"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22541069"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22541069"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Richard J L F Lemmers, Patrick J van der Vliet, David San Leon Granado, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High-resolution breakpoint junction mapping of proximally extended D4Z4 deletions in FSHD1 reveals evidence for a founder effect."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddab250"}], "href": "https://doi.org/10.1093/hmg/ddab250"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34559225"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34559225"}]}]}]}
Synonyms DBE-T, DUX4L30
NCBI Gene ID 100419743
API
Download Associations
Predicted Functions View DBET's ARCHS4 Predicted Functions.
Co-expressed Genes View DBET's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View DBET's ARCHS4 Predicted Functions.

Functional Associations

DBET has 19 functional associations with biological entities spanning 1 categories (functional term, phrase or reference) extracted from 1 datasets.

Click the + buttons to view associations for DBET from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GeneRIF Biological Term Annotations biological terms co-occuring with DBET gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.