DDX6 Gene

HGNC Family	DEAD box polypeptides (DDX)
Name	DEAD (Asp-Glu-Ala-Asp) box helicase 6
Description	This gene encodes a member of the DEAD box protein family. The protein is an RNA helicase found in P-bodies and stress granules, and functions in translation suppression and mRNA degradation. It is required for microRNA-induced gene silencing. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Mar 2012]
Summary	{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n DDX6, also known as RCK/p54 or Me31B, is a highly conserved DEAD‐box RNA helicase that plays a central role in orchestrating mRNA metabolism. It functions as an integral component of several ribonucleoprotein complexes that mediate mRNA decapping, translational repression, and subsequent mRNA decay. Structural and biochemical studies have demonstrated that the C‐terminal RecA-like domain of DDX6 engages decapping activators—such as EDC3, via a conserved FDF motif—to promote assembly of decapping complexes within cytoplasmic processing bodies (P-bodies)."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In addition, DDX6 is recruited by the CCR4-NOT complex through an interaction between the CNOT1 MIF4G domain and the C-terminal RecA domain of DDX6, thereby linking miRNA-mediated gene silencing to translational inhibition and mRNA degradation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its role in mRNA decay, DDX6 is essential for the formation and functional integrity of RNA granules, including P-bodies and stress granules, where it helps sequester and remodel mRNPs to regulate mRNA storage and turnover."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Its interaction with ataxin-2 has further implicated DDX6 in modulating stress granule assembly, linking RNA metabolism to neurodegenerative processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Moreover, DDX6 is required for the replication of RNA viruses, as evidenced by studies showing that efficient hepatitis C virus (HCV) replication depends on its helicase activity and its ability to form complexes with viral RNA, while similar requirements have been observed in dengue virus replication."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In developmental contexts, DDX6-mediated translational repression influences cell fate decisions. In embryonic stem cells and adult progenitors, DDX6 activity within P-bodies limits the translation of fate-instructive mRNAs, thereby impacting differentiation and maintenance of pluripotency or self-renewal."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " Additionally, genomic studies have identified DDX6 as a frequently amplified gene in certain myeloid malignancies, suggesting that its dysregulation may contribute to oncogenic gene expression programs, while interactions with ataxin-2–like proteins further associate it with neurodegenerative disease processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore DDX6 as a pivotal mediator linking mRNA translational repression, decapping and decay, as well as viral replication and cell fate control, thereby integrating posttranscriptional gene regulation across diverse physiological and pathological contexts"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "–."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Martin Fenger-Grøn, Christy Fillman, Bodil Norrild, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2005.10.031"}], "href": "https://doi.org/10.1016/j.molcel.2005.10.031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16364915"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16364915"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Felix Tritschler, Joerg E Braun, Ana Eulalio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural basis for the mutually exclusive anchoring of P body components EDC3 and Tral to the DEAD box protein DDX6/Me31B."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2009.02.014"}], "href": "https://doi.org/10.1016/j.molcel.2009.02.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19285948"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19285948"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Michèle Ernoult-Lange, Sonia Baconnais, Maryannick Harper, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Multiple binding of repressed mRNAs by the P-body protein Rck/p54."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.034314.112"}], "href": "https://doi.org/10.1261/rna.034314.112"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22836354"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22836354"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hansruedi Mathys, Jérôme Basquin, Sevim Ozgur, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural and biochemical insights to the role of the CCR4-NOT complex and DDX6 ATPase in microRNA repression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2014.03.036"}], "href": "https://doi.org/10.1016/j.molcel.2014.03.036"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24768538"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24768538"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ying Chen, Andreas Boland, Duygu Kuzuoğlu-Öztürk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A DDX6-CNOT1 complex and W-binding pockets in CNOT9 reveal direct links between miRNA target recognition and silencing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2014.03.034"}], "href": "https://doi.org/10.1016/j.molcel.2014.03.034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24768540"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24768540"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Christopher Rouya, Nadeem Siddiqui, Masahiro Morita, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human DDX6 effects miRNA-mediated gene silencing via direct binding to CNOT1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.045302.114"}], "href": "https://doi.org/10.1261/rna.045302.114"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25035296"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25035296"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Maria Alexandra Andrei, Dierk Ingelfinger, Rainer Heintzmann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.2340405"}], "href": "https://doi.org/10.1261/rna.2340405"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15840819"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15840819"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Jessica Ayache, Marianne Bénard, Michèle Ernoult-Lange, et al. "}, {"type": "b", "children": [{"type": "t", "text": "P-body assembly requires DDX6 repression complexes rather than decay or Ataxin2/2L complexes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.E15-03-0136"}], "href": "https://doi.org/10.1091/mbc.E15-03-0136"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25995375"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25995375"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ute Nonhoff, Markus Ralser, Franziska Welzel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ataxin-2 interacts with the DEAD/H-box RNA helicase DDX6 and interferes with P-bodies and stress granules."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e06-12-1120"}], "href": "https://doi.org/10.1091/mbc.e06-12-1120"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17392519"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17392519"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Alex Michael Ward, Katell Bidet, Ang Yinglin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3' UTR structures."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/rna.8.6.17836"}], "href": "https://doi.org/10.4161/rna.8.6.17836"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21957497"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21957497"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Rohit K Jangra, MinKyung Yi, Stanley M Lemon "}, {"type": "b", "children": [{"type": "t", "text": "DDX6 (Rck/p54) is required for efficient hepatitis C virus replication but not for internal ribosome entry site-directed translation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Virol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/JVI.00397-10"}], "href": "https://doi.org/10.1128/JVI.00397-10"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20392846"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20392846"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Bruno Di Stefano, En-Ching Luo, Chuck Haggerty, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Expression analyses identify MLL as a prominent target of 11q23 amplification and support an etiologic role for MLL gain of function in myeloid malignancies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2003-06-2163"}], "href": "https://doi.org/10.1182/blood-2003-06-2163"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12946992"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12946992"}]}]}]}
Synonyms	RCK, P54, HLR2
Proteins	DDX6_HUMAN
NCBI Gene ID	1656
API
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Predicted Functions
Co-expressed Genes
Expression in Tissues and Cell Lines

Functional Associations

DDX6 has 9,993 functional associations with biological entities spanning 9 categories (molecular profile, organism, chemical, disease, phenotype or trait, functional term, phrase or reference, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 129 datasets.

Click the + buttons to view associations for DDX6 from the datasets below.

If available, associations are ranked by standardized value

Harmonizome 3.0

DDX6 Gene

Functional Associations

Please acknowledge the Harmonizome in your publications by citing the following reference(s):

	Dataset	Summary
	Achilles Cell Line Gene Essentiality Profiles	cell lines with fitness changed by DDX6 gene knockdown relative to other cell lines from the Achilles Cell Line Gene Essentiality Profiles dataset.
	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	tissues with high or low expression of DDX6 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	tissues with high or low expression of DDX6 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.
	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	tissue samples with high or low expression of DDX6 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	tissue samples with high or low expression of DDX6 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	tissue samples with high or low expression of DDX6 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	tissues with high or low expression of DDX6 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
	BioGPS Cell Line Gene Expression Profiles	cell lines with high or low expression of DDX6 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
	BioGPS Human Cell Type and Tissue Gene Expression Profiles	cell types and tissues with high or low expression of DDX6 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	cell types and tissues with high or low expression of DDX6 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset.
	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	small molecule perturbations changing expression of DDX6 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
	CCLE Cell Line Gene CNV Profiles	cell lines with high or low copy number of DDX6 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
	CCLE Cell Line Gene Expression Profiles	cell lines with high or low expression of DDX6 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
	CCLE Cell Line Gene Mutation Profiles	cell lines with DDX6 gene mutations from the CCLE Cell Line Gene Mutation Profiles dataset.
	CCLE Cell Line Proteomics	Cell lines associated with DDX6 protein from the CCLE Cell Line Proteomics dataset.
	CellMarker Gene-Cell Type Associations	cell types associated with DDX6 gene from the CellMarker Gene-Cell Type Associations dataset.
	ChEA Transcription Factor Binding Site Profiles	transcription factor binding site profiles with transcription factor binding evidence at the promoter of DDX6 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
	ChEA Transcription Factor Targets	transcription factors binding the promoter of DDX6 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
	ChEA Transcription Factor Targets 2022	transcription factors binding the promoter of DDX6 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
	ClinVar Gene-Phenotype Associations 2025	phenotypes associated with DDX6 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
	CM4AI U2OS Cell Map Protein Localization Assemblies	assemblies containing DDX6 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
	CMAP Signatures of Differentially Expressed Genes for Small Molecules	small molecule perturbations changing expression of DDX6 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
	COMPARTMENTS Curated Protein Localization Evidence Scores	cellular components containing DDX6 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	cellular components containing DDX6 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
	COMPARTMENTS Experimental Protein Localization Evidence Scores	cellular components containing DDX6 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores dataset.
	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	cellular components containing DDX6 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
	COMPARTMENTS Text-mining Protein Localization Evidence Scores	cellular components co-occuring with DDX6 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.
	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	cellular components co-occuring with DDX6 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
	CORUM Protein Complexes	protein complexs containing DDX6 protein from the CORUM Protein Complexes dataset.
	COSMIC Cell Line Gene CNV Profiles	cell lines with high or low copy number of DDX6 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
	COSMIC Cell Line Gene Mutation Profiles	cell lines with DDX6 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
	CTD Gene-Disease Associations	diseases associated with DDX6 gene/protein from the curated CTD Gene-Disease Associations dataset.
	DISEASES Curated Gene-Disease Association Evidence Scores	diseases involving DDX6 gene from the DISEASES Curated Gene-Disease Assocation Evidence Scores dataset.
	DISEASES Curated Gene-Disease Association Evidence Scores 2025	diseases involving DDX6 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
	DISEASES Experimental Gene-Disease Association Evidence Scores	diseases associated with DDX6 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset.
	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	diseases associated with DDX6 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
	DISEASES Text-mining Gene-Disease Association Evidence Scores	diseases co-occuring with DDX6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	diseases co-occuring with DDX6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
	DisGeNET Gene-Disease Associations	diseases associated with DDX6 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
	DisGeNET Gene-Phenotype Associations	phenotypes associated with DDX6 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.