ELP1 Gene

Name elongator acetyltransferase complex subunit 1
Description The protein encoded by this gene is a scaffold protein and a regulator for three different kinases involved in proinflammatory signaling. The encoded protein can bind NF-kappa-B-inducing kinase and I-kappa-B kinases through separate domains and assemble them into an active kinase complex. Mutations in this gene have been associated with familial dysautonomia. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n ELP1 (also known as IKAP), a core subunit of the multi‐protein Elongator complex, plays an essential dual role in regulating both gene expression and cytoskeletal dynamics. In the nucleus, ELP1 is required for efficient transcriptional elongation and proper histone acetylation, as well as for the catalytic modification of tRNA wobble uridines. In familial dysautonomia (FD), a mutation in the IKBKAP gene leads to tissue‐specific skipping of exon 20 and a consequent reduction in ELP1 protein levels. This insufficiency impairs transcription of key target genes—many of which are involved in cell motility—and disrupts tRNA modification, ultimately compromising protein translation fidelity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, studies using animal models have demonstrated that loss of ELP1 function in neural crest–derived and post‐migratory neurons results in defective neurite outgrowth, abnormal cytoskeletal organization, and failed target innervation. These defects contribute to the progressive degeneration of sensory and autonomic neurons and, in severe cases, lead to embryonic lethality due to impaired neurovascular development and defective meiotic processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, alterations in cytoskeletal regulators such as filamin A and SCG10, observed in cells with reduced ELP1, indicate that the protein also has important non‐nuclear functions. These include maintaining proper cell adhesion, migration, and neurite extension, all of which are critical for nervous system development and maintenance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore that ELP1 is indispensable for both nuclear processes—ensuring accurate transcriptional output and tRNA modifications—and cytoplasmic pathways that regulate the cytoskeleton. Any perturbation in ELP1 levels, as seen in FD and related disorders, therefore disrupts a critical network of gene expression and structural regulation, leading to severe neurodevelopmental and neurodegenerative consequences."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Pierre Close, Nicola Hawkes, Isabelle Cornez, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Tissue-specific reduction in splicing efficiency of IKBKAP due to the major mutation associated with familial dysautonomia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/368263"}], "href": "https://doi.org/10.1086/368263"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12577200"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12577200"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yei-Tsung Chen, Matthew M Hims, Ranjit S Shetty, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of mouse Ikbkap, a subunit of elongator, leads to transcriptional deficits and embryonic lethality that can be rescued by human IKBKAP."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01313-08"}], "href": "https://doi.org/10.1128/MCB.01313-08"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19015235"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19015235"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Lars Dan Johansen, Tiina Naumanen, Astrid Knudsen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "IKAP localizes to membrane ruffles with filamin A and regulates actin cytoskeleton organization and cell migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.013722"}], "href": "https://doi.org/10.1242/jcs.013722"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18303054"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18303054"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Fu-Jung Lin, Li Shen, Chuan-Wei Jang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ikbkap/Elp1 deficiency causes male infertility by disrupting meiotic progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1003516"}], "href": "https://doi.org/10.1371/journal.pgen.1003516"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23717213"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23717213"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "David Cheishvili, Channa Maayan, Rachel Cohen-Kupiec, et al. "}, {"type": "b", "children": [{"type": "t", "text": "IKAP/Elp1 involvement in cytoskeleton regulation and implication for familial dysautonomia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddr036"}], "href": "https://doi.org/10.1093/hmg/ddr036"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21273291"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21273291"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "David Cheishvili, Channa Maayan, Yoav Smith, et al. "}, {"type": "b", "children": [{"type": "t", "text": "IKAP/hELP1 deficiency in the cerebrum of familial dysautonomia patients results in down regulation of genes involved in oligodendrocyte differentiation and in myelination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddm157"}], "href": "https://doi.org/10.1093/hmg/ddm157"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17591626"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17591626"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Paula Dietrich, Shanta Alli, Revathi Shanmugasundaram, et al. "}, {"type": "b", "children": [{"type": "t", "text": "IKAP expression levels modulate disease severity in a mouse model of familial dysautonomia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/dds354"}], "href": "https://doi.org/10.1093/hmg/dds354"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22922231"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22922231"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Hadas Keren, Maya Donyo, David Zeevi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Phosphatidylserine increases IKBKAP levels in familial dysautonomia cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0015884"}], "href": "https://doi.org/10.1371/journal.pone.0015884"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21209961"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21209961"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Matthew M Hims, Ranjit S Shetty, James Pickel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A humanized IKBKAP transgenic mouse models a tissue-specific human splicing defect."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2007.05.012"}], "href": "https://doi.org/10.1016/j.ygeno.2007.05.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17644305"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17644305"}]}]}]}
NCBI Gene ID 8518
API
Download Associations
Predicted Functions View ELP1's ARCHS4 Predicted Functions.
Co-expressed Genes View ELP1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ELP1's ARCHS4 Predicted Functions.

Functional Associations

ELP1 has 1,166 functional associations with biological entities spanning 5 categories (disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for ELP1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ELP1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CCLE Cell Line Proteomics Cell lines associated with ELP1 protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with ELP1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of ELP1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving ELP1 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with ELP1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with ELP1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with ELP1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with ELP1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Biological Process Annotations 2023 biological processes involving ELP1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by ELP1 gene from the curated GO Molecular Function Annotations 2023 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of ELP1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of ELP1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by ELP1 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of ELP1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of ELP1 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by ELP1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of ELP1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
PFOCR Pathway Figure Associations 2024 pathways involving ELP1 protein from the Wikipathways PFOCR 2024 dataset.
Reactome Pathways 2024 pathways involving ELP1 protein from the Reactome Pathways 2024 dataset.
WikiPathways Pathways 2024 pathways involving ELP1 protein from the WikiPathways Pathways 2024 dataset.