| HGNC Family | Non-coding RNAs |
| Name | EMX2 opposite strand/antisense RNA |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The long noncoding RNA EMX2OS plays multifaceted, context‐dependent roles in both developmental processes and cancer. In the developing central nervous system, EMX2OS modulates the expression of its sense partner EMX2 by facilitating post‐transcriptional downregulation—possibly through a Dicer‐dependent mechanism—thereby establishing a reciprocal regulatory loop critical for proper CNS patterning."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In several cancers, EMX2OS exhibits divergent functions. In papillary thyroid cancer, reduced EMX2OS levels are strongly associated with adverse recurrence‐free survival, suggesting its utility as an independent prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Similarly, in gastric cancer, EMX2OS was identified as a key enhancer RNA whose decreased expression correlates with aggressive clinicopathologic features and poor survival outcomes, highlighting its potential as a prognostic indicator."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In pediatric renal malignancies, such as Wilms’ tumor, EMX2OS acts as a tumor suppressor by functioning as a microRNA sponge for miR‑654‑3p, which leads to diminished cell proliferation, migration, invasion, and overall tumor growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In contrast, in ovarian cancer, overexpression of EMX2OS confers oncogenic properties—it binds to miR‑654, thereby upregulating AKT3 and its downstream target PD‑L1, and ultimately promoting enhanced cell proliferation, invasion, and sphere formation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, in prostate cancer, EMX2OS is downregulated; its restoration—together with the binding of the RNA‐binding protein FUS—activates the cGMP‑PKG pathway, leading to suppressed cell proliferation, migration, and invasion, with consequent attenuation of tumor growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Network analyses in laryngeal squamous cell carcinoma have also implicated EMX2OS as an integral component of competing endogenous RNA circuits, underscoring its potential as a biomarker in malignant settings."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies reveal that EMX2OS exerts critical regulatory functions by modulating gene expression through ceRNA mechanisms, influencing both organ development and tumorigenesis. Its context‐dependent roles—ranging from tumor suppressive to oncogenic—make it a promising candidate for prognostic assessment and as a therapeutic target across diverse biological systems.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Giulia Spigoni, Chiara Gedressi, Antonello Mallamaci "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of Emx2 expression by antisense transcripts in murine cortico-cerebral precursors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0008658"}], "href": "https://doi.org/10.1371/journal.pone.0008658"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20066053"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20066053"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yi Gu, Chao Feng, Tong Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The downregulation of lncRNA EMX2OS might independently predict shorter recurrence-free survival of classical papillary thyroid cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0209338"}], "href": "https://doi.org/10.1371/journal.pone.0209338"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30576338"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30576338"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ge-Xin Liu, Yu-Zhen Tan, Guo-Chao He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Medicine (Baltimore) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/MD.0000000000027535"}], "href": "https://doi.org/10.1097/MD.0000000000027535"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34731149"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34731149"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Zhi-Hong Chen, Ming-Yu Cui, Hong-Mei Zhang "}, {"type": "b", "children": [{"type": "t", "text": "EMX2OS Delays Wilms'Tumor Progression via Targeting miR-654-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Clin Lab Sci (2022)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35181613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35181613"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Meng Duan, Meixia Fang, Changhe Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA EMX2OS Induces Proliferation, Invasion and Sphere Formation of Ovarian Cancer Cells via Regulating the miR-654-3p/AKT3/PD-L1 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Manag Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/CMAR.S229013"}], "href": "https://doi.org/10.2147/CMAR.S229013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32273754"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32273754"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Zhiqiang Wang, Chaowei Zhang, Junkai Chang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA EMX2OS, Regulated by TCF12, Interacts with FUS to Regulate the Proliferation, Migration and Invasion of Prostate Cancer Cells Through the cGMP-PKG Signaling Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S243552"}], "href": "https://doi.org/10.2147/OTT.S243552"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32801740"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32801740"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Zhengyi Tang, Ganguan Wei, Longcheng Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Signature microRNAs and long noncoding RNAs in laryngeal cancer recurrence identified using a competing endogenous RNA network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2019.10143"}], "href": "https://doi.org/10.3892/mmr.2019.10143"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31059106"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31059106"}]}]}]}
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| Synonyms | EMX2-AS1, NCRNA00045 |
| NCBI Gene ID | 196047 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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EMX2OS has 1,453 functional associations with biological entities spanning 7 categories (molecular profile, organism, chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 32 datasets.
Click the + buttons to view associations for EMX2OS from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of EMX2OS gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of EMX2OS gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of EMX2OS gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of EMX2OS gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with EMX2OS gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of EMX2OS gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of EMX2OS gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of EMX2OS gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with EMX2OS gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at EMX2OS gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of EMX2OS gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of EMX2OS gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing EMX2OS from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing EMX2OS from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of EMX2OS gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of EMX2OS gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of EMX2OS gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of EMX2OS gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of EMX2OS gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of EMX2OS gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of EMX2OS gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of EMX2OS gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of EMX2OS gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with EMX2OS gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with EMX2OS gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with EMX2OS gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of EMX2OS gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of EMX2OS gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of EMX2OS gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of EMX2OS gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at EMX2OS gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of EMX2OS gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |