ENTPD3-AS1 Gene

Name ENTPD3 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have demonstrated that the long non‐coding RNA ENTPD3‐AS1 plays a multifaceted role in cancer pathogenesis. In renal cell carcinoma (RCC), a functional SNP (rs67311347) leads to the creation of a novel binding motif for the transcription factor ZNF8, which in turn upregulates ENTPD3‐AS1 expression via enhancer activity. Despite its overall downregulation in RCC tissues, increased ENTPD3‐AS1 levels are associated with improved overall and progression‐free survival. Functionally, ENTPD3‐AS1 exerts tumor‐suppressive effects by interacting with miR‐155-5p to activate the expression of the tumor suppressor HIF-1α; notably, the anti-proliferative effects of ENTPD3‐AS1 in RCC cell lines are abrogated upon HIF-1α knockdown."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Moreover, through comprehensive ceRNA network analyses, ENTPD3‐AS1 has been identified as a potential prognostic biomarker and therapeutic target in clear cell kidney carcinoma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its role in RCC, genetic studies have implicated ENTPD3‐AS1 as a rare variant associated with prostate cancer susceptibility in a Korean population."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Although a separate study examining genomic regulatory regions and nearby long intergenic non-coding RNAs (lincRNAs) did not directly elaborate on ENTPD3‐AS1"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", the convergence of data from these analyses indicates that ENTPD3‐AS1 may function as an important regulator in tumorigenesis by modulating miRNA-mediated signaling pathways.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jiangyi Wang, Yun Zou, Bowen Du, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SNP-mediated lncRNA-ENTPD3-AS1 upregulation suppresses renal cell carcinoma via miR-155/HIF-1α signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-021-03958-4"}], "href": "https://doi.org/10.1038/s41419-021-03958-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34218253"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34218253"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hehuan Zhu, Jun Lu, Hu Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional Long Noncoding RNAs (lncRNAs) in Clear Cell Kidney Carcinoma Revealed by Reconstruction and Comprehensive Analysis of the lncRNA-miRNA-mRNA Regulatory Network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/MSM.910773"}], "href": "https://doi.org/10.12659/MSM.910773"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30444862"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30444862"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jong Jin Oh, Manu Shivakumar, Jason Miller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An exome-wide rare variant analysis of Korean men identifies three novel genes predisposing to prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-019-53445-2"}], "href": "https://doi.org/10.1038/s41598-019-53445-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31748686"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31748686"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Megan Leask, Amy Dowdle, Hamish Salvesen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional Urate-Associated Genetic Variants Influence Expression of lincRNAs "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "LINC01229"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " and "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "MAFTRR"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": "."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2018.00733"}], "href": "https://doi.org/10.3389/fgene.2018.00733"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30719032"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30719032"}]}]}]}
NCBI Gene ID 285266
API
Download Associations
Predicted Functions View ENTPD3-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View ENTPD3-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ENTPD3-AS1's ARCHS4 Predicted Functions.

Functional Associations

ENTPD3-AS1 has 1,805 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for ENTPD3-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of ENTPD3-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of ENTPD3-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of ENTPD3-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ENTPD3-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of ENTPD3-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of ENTPD3-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of ENTPD3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of ENTPD3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of ENTPD3-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ENTPD3-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of ENTPD3-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWASdb SNP-Disease Associations diseases associated with ENTPD3-AS1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with ENTPD3-AS1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of ENTPD3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of ENTPD3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of ENTPD3-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of ENTPD3-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ENTPD3-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.