EPB41L4A-AS1 Gene

Name EPB41L4A antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n EPB41L4A‐AS1 is a multifunctional long non‐coding RNA whose roles vary with cellular context and disease state. In mesenchymal stem cells, EPB41L4A‐AS1 is targeted by miR‐146a, and its downregulation is associated with reduced cell proliferation via effects on the cell cycle, whereas its ectopic overexpression promotes proliferation through modulation of cell cycle‐related signaling pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In cancer, EPB41L4A‐AS1 appears to have context‐dependent functions. In non‐small cell lung cancer, reduced levels correlate with tumorigenesis and poorer overall survival, suggesting a potential tumor‐suppressive role"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", while in breast cancer, low EPB41L4A‐AS1 expression is associated with enhanced cell proliferation, migration, invasion, and diminished apoptosis, indicating its function as a tumor suppressor."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Conversely, in colorectal cancer, EPB41L4A‐AS1 is highly expressed and appears to drive proliferation, metastasis, and epithelial‐mesenchymal transition through activation of Rho/ROCK signaling"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "; additionally, its inclusion in ceRNA networks in cervical cancer further supports its regulatory impact on tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond cell proliferation, EPB41L4A‐AS1 contributes to metabolic regulation. In type 2 diabetes mellitus, for instance, EPB41L4A‐AS1 interacts with the acetyltransferase GCN5 to modify histone marks at promoters of GLUT4/2 and TXNIP, thereby reducing glucose uptake in muscle cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " In placental trophoblasts related to early recurrent miscarriage, its upregulation shifts cellular metabolism away from glycolysis and towards fatty acid oxidation by altering promoter histone modifications, which may disrupt the Warburg-like effect necessary for rapid villous growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in the context of cancer metabolic reprogramming, EPB41L4A‐AS1 functions as a repressor of the Warburg effect by interacting with nucleolar proteins such as HDAC2 and NPM1. Its depletion increases glycolysis and glutaminolysis, thereby sensitizing tumors to glutaminase inhibitors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Finally, network analyses in various hematologic malignancies also implicate EPB41L4A‐AS1 in regulatory circuits governing cell differentiation and proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, EPB41L4A‐AS1 plays diverse roles in modulating cell proliferation, cell cycle progression, metabolic reprogramming, and inflammatory responses. Its deregulated expression in various cancers and metabolic disorders highlights its potential utility as a diagnostic biomarker and therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Penglei Cui, Xiaoying Zhao, Jinlong Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-146a interacting with lncRNA EPB41L4A-AS1 and lncRNA SNHG7 inhibits proliferation of bone marrow-derived mesenchymal stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29217"}], "href": "https://doi.org/10.1002/jcp.29217"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31612476"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31612476"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Siv Anita Hegre, Helle Samdal, Antonin Klima, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Joint changes in RNA, RNA polymerase II, and promoter activity through the cell cycle identify non-coding RNAs involved in proliferation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-97909-w"}], "href": "https://doi.org/10.1038/s41598-021-97909-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34556693"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34556693"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Meiqi Wang, Sihan Zheng, Xi Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrated Analysis of lncRNA-miRNA-mRNA ceRNA Network Identified lncRNA EPB41L4A-AS1 as a Potential Biomarker in Non-small Cell Lung Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2020.511676"}], "href": "https://doi.org/10.3389/fgene.2020.511676"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33193600"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33193600"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Fan Yang, Shixu Lv "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA EPB41L4A-AS1 Regulates Cell Proliferation, Apoptosis and Metastasis in Breast Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Clin Lab Sci (2022)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35181612"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35181612"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jie Bin, Shaolin Nie, Ziyuan Tang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA EPB41L4A-AS1 functions as an oncogene by regulating the Rho/ROCK pathway in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29880"}], "href": "https://doi.org/10.1002/jcp.29880"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32557646"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32557646"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Minjie He, Yan Lin, Yuzhen Xu "}, {"type": "b", "children": [{"type": "t", "text": "Identification of prognostic biomarkers in colorectal cancer using a long non-coding RNA-mediated competitive endogenous RNA network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.9936"}], "href": "https://doi.org/10.3892/ol.2019.9936"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30854042"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30854042"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Peng Chen, Weiyuan Zhang, Yu Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of aberrantly expressed long non‑coding RNAs, microRNAs, and mRNAs associated with the competitive endogenous RNA network in cervical cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2020.11120"}], "href": "https://doi.org/10.3892/mmr.2020.11120"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32377727"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32377727"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Youming Lei, Yunfei Shi, Jin Duan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of alternative splicing and lncRNA genes in pathogenesis of small cell lung cancer based on their RNA sequencing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Adv Clin Exp Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.17219/acem/94392"}], "href": "https://doi.org/10.17219/acem/94392"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31403267"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31403267"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Weijie Liao, Naihan Xu, Haowei Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Persistent high glucose induced EPB41L4A-AS1 inhibits glucose uptake via GCN5 mediating crotonylation and acetylation of histones and non-histones."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Transl Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ctm2.699"}], "href": "https://doi.org/10.1002/ctm2.699"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35184403"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35184403"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yuanchang Zhu, Qing Liu, Meijian Liao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of lncRNA EPB41L4A-AS1 Induces Metabolic Reprogramming in Trophoblast Cells and Placenta Tissue of Miscarriage."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Ther Nucleic Acids (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.omtn.2019.09.017"}], "href": "https://doi.org/10.1016/j.omtn.2019.09.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31671345"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31671345"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Meijian Liao, Weijie Liao, Naihan Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA EPB41L4A-AS1 regulates glycolysis and glutaminolysis by mediating nucleolar translocation of HDAC2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EBioMedicine (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ebiom.2019.01.035"}], "href": "https://doi.org/10.1016/j.ebiom.2019.01.035"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30796006"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30796006"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Ziqing Wang, Weijie Liao, Fuhai Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of lncRNA EPB41L4A-AS1 Mediates Activation of MYD88-Dependent NF-κB Pathway in Diabetes-Related Inflammation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetes Metab Syndr Obes (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/DMSO.S280765"}], "href": "https://doi.org/10.2147/DMSO.S280765"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33505165"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33505165"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Katarina Szikszai, Zdenek Krejcik, Jiri Klema, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA Profiling Reveals That the Deregulation of H19, WT1-AS, TCL6, and LEF1-AS1 Is Associated with Higher-Risk Myelodysplastic Syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancers (Basel) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cancers12102726"}], "href": "https://doi.org/10.3390/cancers12102726"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32977510"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32977510"}]}]}]}
Synonyms NCRNA00219, TIGA1, C5ORF26
NCBI Gene ID 114915
API
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Predicted Functions View EPB41L4A-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View EPB41L4A-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View EPB41L4A-AS1's ARCHS4 Predicted Functions.

Functional Associations

EPB41L4A-AS1 has 2,500 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 31 datasets.

Click the + buttons to view associations for EPB41L4A-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of EPB41L4A-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of EPB41L4A-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of EPB41L4A-AS1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of EPB41L4A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of EPB41L4A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with EPB41L4A-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of EPB41L4A-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of EPB41L4A-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
CTD Gene-Disease Associations diseases associated with EPB41L4A-AS1 gene/protein from the curated CTD Gene-Disease Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at EPB41L4A-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of EPB41L4A-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of EPB41L4A-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with EPB41L4A-AS1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing EPB41L4A-AS1 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of EPB41L4A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of EPB41L4A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of EPB41L4A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of EPB41L4A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of EPB41L4A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of EPB41L4A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of EPB41L4A-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of EPB41L4A-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of EPB41L4A-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of EPB41L4A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of EPB41L4A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain EPB41L4A-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of EPB41L4A-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of EPB41L4A-AS1 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at EPB41L4A-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of EPB41L4A-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores tissues with high expression of EPB41L4A-AS1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.