ESRG Gene

HGNC Family Non-coding RNAs
Name embryonic stem cell related (non-protein coding)
Description Part of nucleus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n ESRG (also referred to as HESRG) was initially identified as a novel gene that is highly expressed in undifferentiated human embryonic stem cells (hESCs) and induced pluripotent stem cells (iPSCs), suggesting a potential role in maintaining pluripotency and self‐renewal."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In addition, an early transient expression of ESRG has been demonstrated during reprogramming processes where its appearance marks a critical intermediate state that is associated with a proliferation pause and linked to cell cycle regulatory mechanisms."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Although ESRG was once considered an important factor for the maintenance of the pluripotent state, targeted deletion experiments showed that ESRG is dispensable for both the primed and naïve pluripotent states, indicating that its function is not essential for the self‐renewal or reprogramming capacities of hESCs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its role in stem cell pluripotency, ESRG has been found to interact with cellular proteins—such as COXII—to influence mitochondrial apoptosis in hESCs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Moreover, ESRG is among a set of genes that are expressed at high levels in both ES and reprogrammed cells, setting them apart from differentiated cells; this property makes ESRG a useful marker for detecting residual undifferentiated cells in cell products."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the oncologic context, aberrant expression patterns of ESRG have been identified in certain tumors. For instance, high ESRG expression was observed exclusively in intracranial germinomas and embryonal carcinomas, and in colon cancer ESRG levels were found to distinguish tumor from normal tissues and to correlate negatively with overall patient survival."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Overall, while ESRG may not be critical for the intrinsic maintenance of pluripotency, its distinct and dynamic expression pattern in early stem cell states and during reprogramming, as well as its emerging value as a biomarker in various cancers, highlights its importance as a molecular marker for both basic stem cell research and clinical applications.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ming Zhao, Caiping Ren, Hong Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptional profiling of human embryonic stem cells and embryoid bodies identifies HESRG, a novel stem cell gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2007.08.081"}], "href": "https://doi.org/10.1016/j.bbrc.2007.08.081"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17803967"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17803967"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Guifei Li, Caiping Ren, Jia Shi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification, expression and subcellular localization of ESRG."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2013.04.062"}], "href": "https://doi.org/10.1016/j.bbrc.2013.04.062"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23628413"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23628413"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Hui Liu, Shasha Li, Caiping Ren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Generation of an ESRG Pr-tdTomato reporter human embryonic stem cell line, CSUe011-A, using CRISPR/Cas9 editing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cell Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.scr.2020.101983"}], "href": "https://doi.org/10.1016/j.scr.2020.101983"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32919352"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32919352"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tim A Rand, Kenta Sutou, Koji Tanabe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MYC Releases Early Reprogrammed Human Cells from Proliferation Pause via Retinoblastoma Protein Inhibition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2018.03.057"}], "href": "https://doi.org/10.1016/j.celrep.2018.03.057"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29641997"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29641997"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kazutoshi Takahashi, Michiko Nakamura, Chikako Okubo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1009587"}], "href": "https://doi.org/10.1371/journal.pgen.1009587"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34033652"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34033652"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jia Shi, Caiping Ren, Hui Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An ESRG-interacting protein, COXII, is involved in pro-apoptosis of human embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2015.02.130"}], "href": "https://doi.org/10.1016/j.bbrc.2015.02.130"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25748575"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25748575"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Y N Cai, X H Dai, Q H Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gene expression profiling of somatic and pluripotent cells reveals novel pathways involved in reprogramming."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genet Mol Res (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4238/2015.October.5.21"}], "href": "https://doi.org/10.4238/2015.October.5.21"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26505355"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26505355"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Keisuke Sekine, Syusaku Tsuzuki, Ryota Yasui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Robust detection of undifferentiated iPSC among differentiated cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-020-66845-6"}], "href": "https://doi.org/10.1038/s41598-020-66845-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32581272"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32581272"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Siyi Wanggou, Xingjun Jiang, Qiaoyu Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HESRG: a novel biomarker for intracranial germinoma and embryonal carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurooncol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11060-011-0673-7"}], "href": "https://doi.org/10.1007/s11060-011-0673-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21861197"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21861197"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Natalie Filippov-Levy, Hallel Cohen-Schussheim, Claes G Tropé, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression and clinical role of long non-coding RNA in high-grade serous carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gynecol Oncol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygyno.2018.01.004"}], "href": "https://doi.org/10.1016/j.ygyno.2018.01.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29310950"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29310950"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Nasrin Jafari, Arezo Nasiran Najafabadi, Behnaz Hamzei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ESRG, LINC00518 and PWRN1 are newly-identified deregulated lncRNAs in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Mol Pathol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexmp.2021.104732"}], "href": "https://doi.org/10.1016/j.yexmp.2021.104732"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34896077"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34896077"}]}]}]}
Synonyms HESRG
Proteins ESRG_HUMAN
NCBI Gene ID 790952
API
Download Associations
Predicted Functions View ESRG's ARCHS4 Predicted Functions.
Co-expressed Genes View ESRG's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ESRG's ARCHS4 Predicted Functions.

Functional Associations

ESRG has 723 functional associations with biological entities spanning 6 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 24 datasets.

Click the + buttons to view associations for ESRG from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of ESRG gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of ESRG gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with ESRG gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of ESRG gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of ESRG gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of ESRG gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ESRG gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of ESRG gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of ESRG gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with ESRG gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of ESRG gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of ESRG gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of ESRG gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of ESRG gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of ESRG gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GO Cellular Component Annotations 2023 cellular components containing ESRG protein from the curated GO Cellular Component Annotations 2023 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of ESRG gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ESRG gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of ESRG gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of ESRG gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of ESRG gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of ESRG gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ESRG gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of ESRG gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.