| Name | embryonic testis differentiation homolog B |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMembers of the Clk kinase family have emerged as critical regulators of pre‐mRNA splicing and cellular response to external cues. In multiple systems, Clk1/4 activity modulates the timing and efficiency of splicing events—for example, by suspending or promoting the maturation of specific transcripts under stress conditions or in response to insulin signaling. In this context, phosphorylation of serine/arginine‐rich splicing factors orchestrates alternative splicing programs that govern not only the expression of key regulatory proteins during stress adaptation and adipogenesis but also the processing of viral mRNAs during influenza infection."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn parallel, a related isoform—the evolutionarily conserved clk-1 (or MCLK1 in mammals)—functions as a mitochondrial hydroxylase that is essential for ubiquinone (coenzyme Q) biosynthesis. This enzyme belongs to the carboxylate-bridged diiron protein family and uniquely employs NADH directly to activate dioxygen for substrate oxidation. Experimental models ranging from in vitro enzymology to transgenic mouse studies indicate that modulating clk-1 expression significantly impacts mitochondrial respiration, cellular ATP levels, and metabolic efficiency. Moreover, altered clk-1 activity influences neuroinflammatory signaling and can extend lifespan by modifying energy metabolism in metabolically active tissues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these studies illustrate the dual functionality of ETDB-associated proteins in coordinating gene expression and mitochondrial homeostasis. By tightly regulating alternative splicing and maintaining coenzyme Q-dependent bioenergetics, these enzymes enable cells to integrate extracellular signals (such as stress and insulin) with metabolic and inflammatory responses, thereby influencing processes as diverse as cellular differentiation, antiviral defense, neuroinflammation, and even organismal lifespan."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kun Jiang, Niketa A Patel, James E Watson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Akt2 regulation of Cdc2-like kinases (Clk/Sty), serine/arginine-rich (SR) protein phosphorylation, and insulin-induced alternative splicing of PKCbetaII messenger ribonucleic acid."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2008-0818"}], "href": "https://doi.org/10.1210/en.2008-0818"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19116344"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19116344"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Kensuke Ninomiya, Naoyuki Kataoka, Masatoshi Hagiwara "}, {"type": "b", "children": [{"type": "t", "text": "Stress-responsive maturation of Clk1/4 pre-mRNAs promotes phosphorylation of SR splicing factor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.201107093"}], "href": "https://doi.org/10.1083/jcb.201107093"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21949414"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21949414"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Pengfei Li, Gay Carter, Jacqueline Romero, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Clk/STY (cdc2-like kinase 1) and Akt regulate alternative splicing and adipogenesis in 3T3-L1 pre-adipocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0053268"}], "href": "https://doi.org/10.1371/journal.pone.0053268"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23308182"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23308182"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Anita Artarini, Michael Meyer, Yu Jin Shin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of influenza A virus mRNA splicing by CLK1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Antiviral Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.antiviral.2019.06.003"}], "href": "https://doi.org/10.1016/j.antiviral.2019.06.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31176694"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31176694"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Rachel K Behan, Stephen J Lippard "}, {"type": "b", "children": [{"type": "t", "text": "The aging-associated enzyme CLK-1 is a member of the carboxylate-bridged diiron family of proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochemistry (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/bi101475z"}], "href": "https://doi.org/10.1021/bi101475z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20923139"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20923139"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mayumi Takahashi, Takahiko Shimizu, Takuji Shirasawa "}, {"type": "b", "children": [{"type": "t", "text": "Reversal of slow growth and heartbeat through the restoration of mitochondrial function in clk-1-deficient mouse embryos by exogenous administration of coenzyme Q10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Gerontol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.exger.2012.03.008"}], "href": "https://doi.org/10.1016/j.exger.2012.03.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22465812"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22465812"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Kazuhide Takahashi, Yoshihiro Noda, Ikuroh Ohsawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Extended lifespan, reduced body size and leg skeletal muscle mass, and decreased mitochondrial function in clk-1 transgenic mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Gerontol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.exger.2014.08.003"}], "href": "https://doi.org/10.1016/j.exger.2014.08.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25106098"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25106098"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Ruinan Gu, Fali Zhang, Gang Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Clk1 deficiency promotes neuroinflammation and subsequent dopaminergic cell death through regulation of microglial metabolic reprogramming."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Behav Immun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbi.2016.10.018"}], "href": "https://doi.org/10.1016/j.bbi.2016.10.018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27769915"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27769915"}]}]}]}
|
| NCBI Gene ID | 100129515 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
ETDB has 141 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 9 datasets.
Click the + buttons to view associations for ETDB from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of ETDB gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of ETDB gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with ETDB protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with ETDB gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of ETDB gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of ETDB gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of ETDB gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of ETDB gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with ETDB protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |