FAM13A-AS1 Gene

Name FAM13A antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FAM13A‐AS1 is a long noncoding RNA that has emerged as a multifunctional regulator in several disease contexts. In thyroid cancer, decreased expression of FAM13A‐AS1 is correlated with longer disease‐free survival, suggesting that elevated levels may be linked to tumor progression and an unfavorable prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In renal cell carcinoma, FAM13A‐AS1 is upregulated and functions in an oncogenic manner; knockdown experiments demonstrated that it promotes cell proliferation, migration, and invasion by acting as a competing endogenous RNA (ceRNA) that decoys miR‐141–3p to upregulate NEK6 expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, in clear cell renal cell carcinoma subtyping analyses, alterations in FAM13A‐AS1, together with changes in miR‐145, have been shown to influence key cellular processes including invasion, apoptosis, migration, and metabolic functions, thereby contributing to subtype‐specific phenotypes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Beyond oncogenesis, FAM13A‐AS1 has also been linked to adverse pharmacological effects; in lithium‐treated patients with bipolar disorder, its expression is associated with the incidence of tremor, pointing to a potential role in modulating treatment response."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, its inclusion in an autophagy‐related lncRNA prognostic signature for bladder cancer further emphasizes its potential utility as a biomarker for patient stratification and prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore the diverse roles of FAM13A‐AS1 in regulating tumor growth, metastasis, and therapeutic outcomes, and they highlight its promise as both a prognostic biomarker and a potential target for therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuansheng Rao, Haiying Liu, Xiaojuan Yan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "In Silico Analysis Identifies Differently Expressed lncRNAs as Novel Biomarkers for the Prognosis of Thyroid Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Comput Math Methods Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/3651051"}], "href": "https://doi.org/10.1155/2020/3651051"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32377223"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32377223"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xin Jun Wang, Si Li, Jiang Fang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA FAM13A-AS1 Promotes Renal Carcinoma Tumorigenesis Through Sponging miR-141-3p to Upregulate NEK6 Expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Mol Biosci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fmolb.2022.738711"}], "href": "https://doi.org/10.3389/fmolb.2022.738711"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35402517"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35402517"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yanyan Wu, Weishan Han, Deling Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of subtype specific biomarkers of clear cell renal cell carcinoma using random forest and greedy algorithm."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biosystems (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biosystems.2021.104372"}], "href": "https://doi.org/10.1016/j.biosystems.2021.104372"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33582210"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33582210"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Florian Krull, Ibrahim Akkouh, Timothy Hughes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dose-dependent transcriptional effects of lithium and adverse effect burden in a psychiatric cohort."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Prog Neuropsychopharmacol Biol Psychiatry (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.pnpbp.2021.110408"}], "href": "https://doi.org/10.1016/j.pnpbp.2021.110408"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34320404"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34320404"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhuolun Sun, Changying Jing, Chutian Xiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An autophagy-related long non-coding RNA prognostic signature accurately predicts survival outcomes in bladder urothelial carcinoma patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.103718"}], "href": "https://doi.org/10.18632/aging.103718"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32805727"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32805727"}]}]}]}
Synonyms NCRNA00039, FAM13AOS, FAM13A1OS
NCBI Gene ID 285512
API
Download Associations
Predicted Functions View FAM13A-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View FAM13A-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FAM13A-AS1's ARCHS4 Predicted Functions.

Functional Associations

FAM13A-AS1 has 1,268 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 27 datasets.

Click the + buttons to view associations for FAM13A-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of FAM13A-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of FAM13A-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of FAM13A-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM13A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of FAM13A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM13A-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of FAM13A-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM13A-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FAM13A-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM13A-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FAM13A-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing FAM13A-AS1 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of FAM13A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of FAM13A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of FAM13A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of FAM13A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of FAM13A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of FAM13A-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of FAM13A-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of FAM13A-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of FAM13A-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM13A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of FAM13A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain FAM13A-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of FAM13A-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FAM13A-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of FAM13A-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.