FAM230B Gene

Name family with sequence similarity 230, member B (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA FAM230B, a member of the FAM230 gene family, has emerged as an important regulatory molecule in several human diseases, particularly in various cancers. Elevated FAM230B expression has been observed in papillary thyroid cancer, where it promotes cell migration, invasion, and epithelial‐mesenchymal transition by sponging miR‑378a‑3p and consequently upregulating WNT5A, indicating its oncogenic function and potential as a diagnostic marker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, in lung adenocarcinoma, FAM230B is significantly increased in tumor tissues and plasma, correlating with larger tumor size and poorer patient survival. These findings suggest that FAM230B may serve as both a diagnostic and prognostic biomarker for lung adenocarcinoma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its role in carcinogenesis, the evolution and genomic organization of the FAM230 family have been highlighted by studies demonstrating that conserved repeat sequences, duplicated and rearranged in low copy repeats of human chromosome 22, give rise to distinct lincRNA gene families, including FAM230B."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, in osteosarcoma, FAM230B localizes predominantly to the cytoplasm and directly interacts with premature miR‑203. By inhibiting miR‑203 maturation, FAM230B facilitates increased cell proliferation, underscoring its role in tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its oncogenic activities, FAM230B has been identified within a non‐coding RNA signature associated with early renal damage in hypertensive patients. Its inclusion in a network of ncRNAs regulating pathways important for filtration barrier integrity and tubular reabsorption further broadens its functional relevance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Finally, in gastric cancer, FAM230B acts as a competing endogenous RNA by sponging miR‑27a‑5p, thereby relieving repression of TOP2A and promoting cancer cell proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Collectively, these studies underscore the multifaceted role of FAM230B as an oncogenic lncRNA and as a participant in other pathological processes, supporting its potential as a diagnostic biomarker and therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qinyi Zhou, Jiajia Feng, Shankai Yin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA FAM230B promotes the metastasis of papillary thyroid cancer by sponging the miR-378a-3p/WNT5A axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2021.01.109"}], "href": "https://doi.org/10.1016/j.bbrc.2021.01.109"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33578293"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33578293"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yu Cao, Hong Zhang, Jianming Tang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA FAM230B is a novel prognostic and diagnostic biomarker for lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2034568"}], "href": "https://doi.org/10.1080/21655979.2022.2034568"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35287554"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35287554"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Nicholas Delihas "}, {"type": "b", "children": [{"type": "t", "text": "Formation of human long intergenic non-coding RNA genes, pseudogenes, and protein genes: Ancestral sequences are key players."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0230236"}], "href": "https://doi.org/10.1371/journal.pone.0230236"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32214344"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32214344"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xuanhe Song, Yaoping Xie, Xianglong Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Subcellular Localization of IncRNA FAM230B in Osteosarcoma and Its Interaction with Early miR-203."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Crit Rev Eukaryot Gene Expr (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1615/CritRevEukaryotGeneExpr.2021039060"}], "href": "https://doi.org/10.1615/CritRevEukaryotGeneExpr.2021039060"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35377981"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35377981"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Angela L Riffo-Campos, Javier Perez-Hernandez, Ana Ortega, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exosomal and Plasma Non-Coding RNA Signature Associated with Urinary Albumin Excretion in Hypertension."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms23020823"}], "href": "https://doi.org/10.3390/ijms23020823"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35055008"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35055008"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yejia Cui, Rong Pu, Jinjun Ye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA FAM230B Promotes Gastric Cancer Growth and Metastasis by Regulating the miR-27a-5p/TOP2A Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dig Dis Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10620-020-06581-z"}], "href": "https://doi.org/10.1007/s10620-020-06581-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32910366"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32910366"}]}]}]}
NCBI Gene ID 642633
API
Download Associations
Predicted Functions View FAM230B's ARCHS4 Predicted Functions.
Co-expressed Genes View FAM230B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FAM230B's ARCHS4 Predicted Functions.

Functional Associations

FAM230B has 117 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for FAM230B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CellMarker Gene-Cell Type Associations cell types associated with FAM230B gene from the CellMarker Gene-Cell Type Associations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of FAM230B gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of FAM230B gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of FAM230B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM230B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain FAM230B protein from the LOCATE Predicted Protein Localization Annotations dataset.