FAM66D Gene

Name family with sequence similarity 66, member D
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although none of the provided abstracts explicitly detail the biological‐function of FAM66D, they all underscore the power of genome‐wide expression and genetic association analyses to identify long noncoding RNAs (lncRNAs) as important players in disease pathogenesis. FAM66D, as a member of this broad class of lncRNAs, is likely to share common themes with other dysregulated noncoding transcripts featured in these studies. For example, in cystic fibrosis‐related meconium ileus, a modifier gene effect was demonstrated through analyses of genetic haplotypes and mouse models that influence intestinal proteolysis and survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the setting of inflammatory bowel disease, comprehensive profiling revealed that many lncRNAs are differentially expressed and co‐regulated with protein‐coding genes involved in immune responses and inflammation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Similarly, transcriptome analyses in gonadotrophin adenoma highlighted a network of lncRNAs interacting with key coding genes of the mTOR pathway, suggesting regulatory roles in tumor pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In end‐stage renal disease, plasma lncRNA signatures were shown to mirror tissue changes and even predict adverse cardiovascular outcomes, further emphasizing the clinical relevance of these molecules."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Finally, an integrative transcriptome‐wide association approach in amyotrophic lateral sclerosis continues to reveal novel candidate genes—including noncoding elements—that may contribute to disease risk."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In this context, FAM66D can be viewed as a potential regulatory lncRNA whose dysregulated expression might contribute to the fine‐tuning of gene networks involved in immune modulation, cellular stress responses, and other pathways relevant to these complex diseases. Though its precise mechanistic roles remain to be determined, its identification among panels of differentially expressed lncRNAs in multiple disease states suggests that FAM66D may serve both as a biomarker and as a modulator of cellular pathways that impact disease susceptibility and progression. Further functional studies will be required to directly elucidate FAM66D’s molecular activities and its potential contributions to the pathogenesis of diverse conditions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lindsay B Henderson, Vishal K Doshi, Scott M Blackman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Variation in MSRA modifies risk of neonatal intestinal obstruction in cystic fibrosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1002580"}], "href": "https://doi.org/10.1371/journal.pgen.1002580"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22438829"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22438829"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Aashiq H Mirza, Claus Hb Berthelsen, Stefan E Seemann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptomic landscape of lncRNAs in inflammatory bowel disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Med (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13073-015-0162-2"}], "href": "https://doi.org/10.1186/s13073-015-0162-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25991924"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25991924"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jiye Li, Chuzhong Li, Jianpeng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide analysis of differentially expressed lncRNAs and mRNAs in primary gonadotrophin adenomas by RNA-seq."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.13948"}], "href": "https://doi.org/10.18632/oncotarget.13948"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27992366"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27992366"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chun-Fu Lai, Yen-Ting Chen, Jian Gu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Circulating long noncoding RNA DKFZP434I0714 predicts adverse cardiovascular outcomes in patients with end-stage renal disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Cardiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ijcard.2018.08.013"}], "href": "https://doi.org/10.1016/j.ijcard.2018.08.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30097337"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30097337"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Lishun Xiao, Zhongshang Yuan, Siyi Jin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Multiple-Tissue Integrative Transcriptome-Wide Association Studies Discovered New Genes Associated With Amyotrophic Lateral Sclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2020.587243"}], "href": "https://doi.org/10.3389/fgene.2020.587243"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33329728"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33329728"}]}]}]}
NCBI Gene ID 100132923
API
Download Associations
Predicted Functions View FAM66D's ARCHS4 Predicted Functions.
Co-expressed Genes View FAM66D's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FAM66D's ARCHS4 Predicted Functions.

Functional Associations

FAM66D has 1,689 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.

Click the + buttons to view associations for FAM66D from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of FAM66D gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of FAM66D gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of FAM66D gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM66D gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM66D gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of FAM66D gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
CMAP Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of FAM66D gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM66D gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FAM66D gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM66D gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FAM66D gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of FAM66D gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of FAM66D gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of FAM66D gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of FAM66D gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of FAM66D gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of FAM66D gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of FAM66D gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of FAM66D gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of FAM66D gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM66D gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of FAM66D gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of FAM66D gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FAM66D gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of FAM66D gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.