FAM99A Gene

Name family with sequence similarity 99, member A (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FAM99A is a long non‐coding RNA that plays multifaceted roles in modulating cell behavior in both pregnancy‐related disorders and cancer. In the context of preeclampsia, decreased FAM99A levels in placental tissues have been associated with impaired trophoblast function—characterized by reduced invasion and migration, increased apoptosis via upregulation of pro‐apoptotic factors (e.g., cleaved caspase‑3, caspase‑9, and Bax) as well as decreased anti‐apoptotic Bcl‑2, and inhibition of Wnt/β‑catenin signaling—whereas overexpression of FAM99A promotes trophoblast survival and metastasis through mechanisms that include sponging miR‑134‑5p to upregulate YAP1."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In addition, genetic variants within FAM99A have been linked to maternal blood pressure regulation, supporting its potential as a diagnostic marker in hypertensive disorders of pregnancy. In hepatocellular carcinoma, emerging evidence indicates that FAM99A is associated with metastatic behavior and may interact with signaling pathways such as JAK2/STAT3 to affect GLUT1‐mediated glycolysis, thereby influencing tumor progression and therapeutic response."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Collectively, these findings underscore a dual role for FAM99A as a regulator of cell invasion, apoptosis, and metabolism in both gestational and oncological settings, suggesting that it may provide a promising target for diagnostic and therapeutic strategies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tongqiang He, Yuan Qiao, Yanxiang Lv, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA FAM99A is downregulated in preeclampsia and exerts a regulatory effect on trophoblast cell invasion, migration and apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2019.10350"}], "href": "https://doi.org/10.3892/mmr.2019.10350"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31173227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31173227"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Bingnv Xu, Xiaofang Geng, Xiaodan Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA FAM99A modulated YAP1 to affect trophoblast cell behaviors in preeclampsia by sponging miR-134-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Braz J Med Biol Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1590/1414-431X20209732"}], "href": "https://doi.org/10.1590/1414-431X20209732"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33111745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33111745"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qiuyan Ge, Ju Zhao, Fujuan Qu "}, {"type": "b", "children": [{"type": "t", "text": "Expression of serum long noncoding RNA FAM99A in patients with hypertensive disorder complicating and its clinical significance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood Press Monit (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/MBP.0000000000000591"}], "href": "https://doi.org/10.1097/MBP.0000000000000591"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35258024"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35258024"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xia Zheng, Yudong Gou, Ziyu Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Icaritin-Induced FAM99A Affects GLUT1-Mediated Glycolysis "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "via"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " Regulating the JAK2/STAT3 Pathway in Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.740557"}], "href": "https://doi.org/10.3389/fonc.2021.740557"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34765550"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34765550"}]}]}]}
NCBI Gene ID 387742
API
Download Associations
Predicted Functions View FAM99A's ARCHS4 Predicted Functions.
Co-expressed Genes View FAM99A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FAM99A's ARCHS4 Predicted Functions.

Functional Associations

FAM99A has 320 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for FAM99A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM99A gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM99A gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of FAM99A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM99A gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FAM99A gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing FAM99A from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of FAM99A gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of FAM99A gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of FAM99A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of FAM99A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM99A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of FAM99A gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain FAM99A protein from the LOCATE Predicted Protein Localization Annotations dataset.
MiRTarBase microRNA Targets microRNAs targeting FAM99A gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of FAM99A gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of FAM99A gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.