FAM99B Gene

Name family with sequence similarity 99, member B (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FAM99B is a long non‐coding RNA that appears to function as a tumor suppressor and may also play a role in glycemic regulation. In hepatocellular carcinoma (HCC), FAM99B is downregulated compared with adjacent normal tissues, and its lower expression is associated with features of aggressive disease—such as vascular invasion, advanced histologic grade, and higher T stage—as well as poorer overall survival. Functional studies have shown that restoring FAM99B expression in HCC cell lines can significantly inhibit cell proliferation, migration, and invasion. Pathway analyses further suggest that FAM99B is co-expressed with genes involved in metabolic pathways and blood coagulation, indicating potential mechanistic links to tumor metabolism and microenvironment regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, genetic association studies have implicated the FAM99B locus in metabolic traits. Specifically, variants at this locus have been associated with alterations in HbA1c levels, suggesting that FAM99B might also contribute to the regulation of glucose metabolism and thereby influence the risk of type 2 diabetes mellitus and coronary artery disease in certain populations."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n\n "}, {"type": "p", "children": [{"type": "t", "text": "\n These findings, along with broader investigations into the functions of long non-coding RNAs in cancer and gene regulation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", suggest that FAM99B may represent a promising therapeutic target and biomarker, with dual relevance in tumor suppression for HCC and in modulating metabolic risk factors.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Meile Mo, Shun Liu, Xiaoyun Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A liver-specific lncRNA, FAM99B, suppresses hepatocellular carcinoma progression through inhibition of cell proliferation, migration, and invasion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cancer Res Clin Oncol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00432-019-02954-8"}], "href": "https://doi.org/10.1007/s00432-019-02954-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31243545"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31243545"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Wael Osman, Ahmed Hassoun, Herbert F Jelinek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetics of type 2 diabetes and coronary artery disease and their associations with twelve cardiometabolic traits in the United Arab Emirates population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2020.144722"}], "href": "https://doi.org/10.1016/j.gene.2020.144722"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32360841"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32360841"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Florent Hubé, Claire Francastel "}, {"type": "b", "children": [{"type": "t", "text": "Mammalian introns: when the junk generates molecular diversity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms16034429"}], "href": "https://doi.org/10.3390/ijms16034429"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25710723"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25710723"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Davide Degli Esposti, Hector Hernandez-Vargas, Catherine Voegele, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of novel long non-coding RNAs deregulated in hepatocellular carcinoma using RNA-sequencing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.7364"}], "href": "https://doi.org/10.18632/oncotarget.7364"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26887054"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26887054"}]}]}]}
NCBI Gene ID 100132464
API
Download Associations
Predicted Functions View FAM99B's ARCHS4 Predicted Functions.
Co-expressed Genes View FAM99B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FAM99B's ARCHS4 Predicted Functions.

Functional Associations

FAM99B has 323 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for FAM99B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM99B gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of FAM99B gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FAM99B gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM99B gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FAM99B gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of FAM99B gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of FAM99B gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of FAM99B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of FAM99B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FAM99B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of FAM99B gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain FAM99B protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of FAM99B gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of FAM99B gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FAM99B gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of FAM99B gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.